SIDRA
Sample Set Annotation Tool
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Groups
SARS_CoV_2_infected_MOI_2
400017753: Series1_NHBE_SARS_CoV_2_1
400017754: Series1_NHBE_SARS_CoV_2_2
400017755: Series1_NHBE_SARS_CoV_2_3
400017773: Series5_A549_SARS_CoV_2_1
400017774: Series5_A549_SARS_CoV_2_2
400017775: Series5_A549_SARS_CoV_2_3
400017785: Series7_Calu3_SARS_CoV_2_1
400017786: Series7_Calu3_SARS_CoV_2_2
400017787: Series7_Calu3_SARS_CoV_2_3
400017822: Series16_A549_ACE2_SARS_CoV_2_1
400017823: Series16_A549_ACE2_SARS_CoV_2_2
400017824: Series16_A549_ACE2_SARS_CoV_2_3
400017825: Series16_A549_ACE2_SARS_CoV_2_Rux_1
400017826: Series16_A549_ACE2_SARS_CoV_2_Rux_2
400017827: Series16_A549_ACE2_SARS_CoV_2_Rux_3
0
samples selected
Move selected samples to group
SARS_CoV_2_infected_MOI_0_2
Mock treatment
RSV_infected_MOI_15
IAV_infected_MOI_5
RSV_infected_MOI_2
HPIV3_infected_MOI_3
IAV_infected_MOI_3
IAVdNS1_infected_MOI_3
human_IFNB_treatment_100U_ml
No_treatment
Move
Create sample set from this group
SARS_CoV_2_infected_MOI_0_2
400017759: Series2_A549_SARS_CoV_2_1
400017760: Series2_A549_SARS_CoV_2_2
400017761: Series2_A549_SARS_CoV_2_3
400017779: Series6_A549_ACE2_SARS_CoV_2_1
400017780: Series6_A549_ACE2_SARS_CoV_2_2
400017781: Series6_A549_ACE2_SARS_CoV_2_3
0
samples selected
Move selected samples to group
SARS_CoV_2_infected_MOI_2
Mock treatment
RSV_infected_MOI_15
IAV_infected_MOI_5
RSV_infected_MOI_2
HPIV3_infected_MOI_3
IAV_infected_MOI_3
IAVdNS1_infected_MOI_3
human_IFNB_treatment_100U_ml
No_treatment
Move
Create sample set from this group
Mock treatment
400017750: Series1_NHBE_Mock_1
400017751: Series1_NHBE_Mock_2
400017752: Series1_NHBE_Mock_3
400017756: Series2_A549_Mock_1
400017757: Series2_A549_Mock_2
400017758: Series2_A549_Mock_3
400017762: Series3_A549_Mock_1
400017763: Series3_A549_Mock_2
400017766: Series4_A549_Mock_1
400017767: Series4_A549_Mock_2
400017770: Series5_A549_Mock_1
400017771: Series5_A549_Mock_2
400017772: Series5_A549_Mock_3
400017776: Series6_A549_ACE2_Mock_1
400017777: Series6_A549_ACE2_Mock_2
400017778: Series6_A549_ACE2_Mock_3
400017782: Series7_Calu3_Mock_1
400017783: Series7_Calu3_Mock_2
400017784: Series7_Calu3_Mock_3
400017788: Series8_A549_Mock_1
400017789: Series8_A549_Mock_2
400017790: Series8_A549_Mock_3
400017797: Series9_NHBE_Mock_1
400017798: Series9_NHBE_Mock_2
400017799: Series9_NHBE_Mock_3
400017800: Series9_NHBE_Mock_4
400017819: Series16_A549_ACE2_Mock_1
400017820: Series16_A549_ACE2_Mock_2
400017821: Series16_A549_ACE2_Mock_3
0
samples selected
Move selected samples to group
SARS_CoV_2_infected_MOI_2
SARS_CoV_2_infected_MOI_0_2
RSV_infected_MOI_15
IAV_infected_MOI_5
RSV_infected_MOI_2
HPIV3_infected_MOI_3
IAV_infected_MOI_3
IAVdNS1_infected_MOI_3
human_IFNB_treatment_100U_ml
No_treatment
Move
Create sample set from this group
RSV_infected_MOI_15
400017764: Series3_A549_RSV_1
400017765: Series3_A549_RSV_2
0
samples selected
Move selected samples to group
SARS_CoV_2_infected_MOI_2
SARS_CoV_2_infected_MOI_0_2
Mock treatment
IAV_infected_MOI_5
RSV_infected_MOI_2
HPIV3_infected_MOI_3
IAV_infected_MOI_3
IAVdNS1_infected_MOI_3
human_IFNB_treatment_100U_ml
No_treatment
Move
Create sample set from this group
IAV_infected_MOI_5
400017768: Series4_A549_IAV_1
400017769: Series4_A549_IAV_2
0
samples selected
Move selected samples to group
SARS_CoV_2_infected_MOI_2
SARS_CoV_2_infected_MOI_0_2
Mock treatment
RSV_infected_MOI_15
RSV_infected_MOI_2
HPIV3_infected_MOI_3
IAV_infected_MOI_3
IAVdNS1_infected_MOI_3
human_IFNB_treatment_100U_ml
No_treatment
Move
Create sample set from this group
RSV_infected_MOI_2
400017791: Series8_A549_RSV_1
400017792: Series8_A549_RSV_2
400017793: Series8_A549_RSV_3
0
samples selected
Move selected samples to group
SARS_CoV_2_infected_MOI_2
SARS_CoV_2_infected_MOI_0_2
Mock treatment
RSV_infected_MOI_15
IAV_infected_MOI_5
HPIV3_infected_MOI_3
IAV_infected_MOI_3
IAVdNS1_infected_MOI_3
human_IFNB_treatment_100U_ml
No_treatment
Move
Create sample set from this group
HPIV3_infected_MOI_3
400017794: Series8_A549_HPIV3_3
400017795: Series8_A549_HPIV3_2
400017796: Series8_A549_HPIV3_1
0
samples selected
Move selected samples to group
SARS_CoV_2_infected_MOI_2
SARS_CoV_2_infected_MOI_0_2
Mock treatment
RSV_infected_MOI_15
IAV_infected_MOI_5
RSV_infected_MOI_2
IAV_infected_MOI_3
IAVdNS1_infected_MOI_3
human_IFNB_treatment_100U_ml
No_treatment
Move
Create sample set from this group
IAV_infected_MOI_3
400017801: Series9_NHBE_IAV_1
400017802: Series9_NHBE_IAV_2
400017803: Series9_NHBE_IAV_3
400017804: Series9_NHBE_IAV_4
0
samples selected
Move selected samples to group
SARS_CoV_2_infected_MOI_2
SARS_CoV_2_infected_MOI_0_2
Mock treatment
RSV_infected_MOI_15
IAV_infected_MOI_5
RSV_infected_MOI_2
HPIV3_infected_MOI_3
IAVdNS1_infected_MOI_3
human_IFNB_treatment_100U_ml
No_treatment
Move
Create sample set from this group
IAVdNS1_infected_MOI_3
400017805: Series9_NHBE_IAVdNS1_1
400017806: Series9_NHBE_IAVdNS1_2
400017807: Series9_NHBE_IAVdNS1_3
400017808: Series9_NHBE_IAVdNS1_4
0
samples selected
Move selected samples to group
SARS_CoV_2_infected_MOI_2
SARS_CoV_2_infected_MOI_0_2
Mock treatment
RSV_infected_MOI_15
IAV_infected_MOI_5
RSV_infected_MOI_2
HPIV3_infected_MOI_3
IAV_infected_MOI_3
human_IFNB_treatment_100U_ml
No_treatment
Move
Create sample set from this group
human_IFNB_treatment_100U_ml
400017809: Series9_NHBE_IFNB_4h_1
400017810: Series9_NHBE_IFNB_4h_2
400017811: Series9_NHBE_IFNB_6h_1
400017812: Series9_NHBE_IFNB_6h_2
400017813: Series9_NHBE_IFNB_12h_1
400017814: Series9_NHBE_IFNB_12h_2
0
samples selected
Move selected samples to group
SARS_CoV_2_infected_MOI_2
SARS_CoV_2_infected_MOI_0_2
Mock treatment
RSV_infected_MOI_15
IAV_infected_MOI_5
RSV_infected_MOI_2
HPIV3_infected_MOI_3
IAV_infected_MOI_3
IAVdNS1_infected_MOI_3
No_treatment
Move
Create sample set from this group
No_treatment
400017815: Series15_HealthyLungBiopsy_2
400017816: Series15_HealthyLungBiopsy_1
400017817: Series15_COVID19Lung_2
400017818: Series15_COVID19Lung_1
0
samples selected
Move selected samples to group
SARS_CoV_2_infected_MOI_2
SARS_CoV_2_infected_MOI_0_2
Mock treatment
RSV_infected_MOI_15
IAV_infected_MOI_5
RSV_infected_MOI_2
HPIV3_infected_MOI_3
IAV_infected_MOI_3
IAVdNS1_infected_MOI_3
human_IFNB_treatment_100U_ml
Move
Create sample set from this group
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Group Settings
Group
SARS_CoV_2_infected_MOI_2
SARS_CoV_2_infected_MOI_0_2
Mock treatment
RSV_infected_MOI_15
IAV_infected_MOI_5
RSV_infected_MOI_2
HPIV3_infected_MOI_3
IAV_infected_MOI_3
IAVdNS1_infected_MOI_3
human_IFNB_treatment_100U_ml
No_treatment
Name
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Move
Move this group to
before
after
SARS_CoV_2_infected_MOI_2
SARS_CoV_2_infected_MOI_0_2
Mock treatment
RSV_infected_MOI_15
IAV_infected_MOI_5
RSV_infected_MOI_2
HPIV3_infected_MOI_3
IAV_infected_MOI_3
IAVdNS1_infected_MOI_3
human_IFNB_treatment_100U_ml
No_treatment
Move
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Split by
Cell Line
Cells
Group
Grouping
Organism
Sample Description
Sample Geo Accession
Strain
Subject Status
Time After Treatment
Tissue Cell type
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4
groups)
Ex:
NHBE, A549, Calu-3, Lung Biopsy
Name by
Appending column name to group name
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1.70.7-stable-gxb1-release