Human IFNG+/- Treg and Tconv transcriptome-GSE59786
Microarray used to detail the global gene transcription underlying sorted IFNg+ and IFNg- Tregs (CD4+CD25+CD127lo) and Tconv (CD4+CD25-CD127+) for fresh (unexpanded) and 14 day expanded cells from human blood.
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Treg and Tconv were FACS isolated from five healthy subjects (median age of 26, range 22-30). Sorted cells were separated into two groups: the first group was stimulated for 4 hours with PMA/ionomycin and labeled with the IFNg cytokine capture kit (Miltenyi Biotech) followed by FACS isolation of IFNg- and IFNg+ populations. The second set was expanded to day 14 prior to reactivation and cytokine cell capture. For each IFNg sorted population, cells were pelleted and flash frozen before RNA isolation and processing.
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| Sample ID | !Sample_title | tissue | cell type | subject id | cell subpopulation | 
|---|---|---|---|---|---|
| GSM1446410 | IFNG.neg.Treg.fresh.rep1 | blood | CD4+CD127-CD25+ Treg | 1 | IFNg negative | 
| GSM1446411 | IFNG.neg.Treg.fresh.rep2 | blood | CD4+CD127-CD25+ Treg | 2 | IFNg negative | 
| GSM1446412 | IFNG.neg.Treg.fresh.rep3 | blood | CD4+CD127-CD25+ Treg | 3 | IFNg negative | 
| GSM1446413 | IFNG.neg.Treg.fresh.rep4 | blood | CD4+CD127-CD25+ Treg | 4 | IFNg negative | 
| GSM1446414 | IFNG.neg.Treg.fresh.rep5 | blood | CD4+CD127-CD25+ Treg | 5 | IFNg negative | 
| File | 
|---|
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| Sample ID | !Sample Title | Tissue | Cell type | Subject id | Cell subpopulation | Treatment group | Subject age range | Subject status | 
|---|---|---|---|---|---|---|---|---|
| GSM1446410 | IFNG.neg.Treg.fresh.rep1  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127-CD25+ Treg  | 
            
          
            
              1  | 
            
          
            
              IFNg negative  | 
            
          
            
              fresh  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446411 | IFNG.neg.Treg.fresh.rep2  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127-CD25+ Treg  | 
            
          
            
              2  | 
            
          
            
              IFNg negative  | 
            
          
            
              fresh  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446412 | IFNG.neg.Treg.fresh.rep3  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127-CD25+ Treg  | 
            
          
            
              3  | 
            
          
            
              IFNg negative  | 
            
          
            
              fresh  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446413 | IFNG.neg.Treg.fresh.rep4  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127-CD25+ Treg  | 
            
          
            
              4  | 
            
          
            
              IFNg negative  | 
            
          
            
              fresh  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446414 | IFNG.neg.Treg.fresh.rep5  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127-CD25+ Treg  | 
            
          
            
              5  | 
            
          
            
              IFNg negative  | 
            
          
            
              fresh  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446415 | IFNG.pos.Treg.fresh.rep1  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127-CD25+ Treg  | 
            
          
            
              1  | 
            
          
            
              IFNg positive  | 
            
          
            
              fresh  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446416 | IFNG.pos.Treg.fresh.rep2  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127-CD25+ Treg  | 
            
          
            
              2  | 
            
          
            
              IFNg positive  | 
            
          
            
              fresh  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446417 | IFNG.pos.Treg.fresh.rep3  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127-CD25+ Treg  | 
            
          
            
              3  | 
            
          
            
              IFNg positive  | 
            
          
            
              fresh  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446418 | IFNG.pos.Treg.fresh.rep4  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127-CD25+ Treg  | 
            
          
            
              4  | 
            
          
            
              IFNg positive  | 
            
          
            
              fresh  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446419 | IFNG.pos.Treg.fresh.rep5  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127-CD25+ Treg  | 
            
          
            
              5  | 
            
          
            
              IFNg positive  | 
            
          
            
              fresh  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446420 | IFNG.neg.Tconv.fresh.rep1  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127+CD25- Tconv  | 
            
          
            
              1  | 
            
          
            
              IFNg negative  | 
            
          
            
              fresh  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446421 | IFNG.neg.Tconv.fresh.rep2  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127+CD25- Tconv  | 
            
          
            
              2  | 
            
          
            
              IFNg negative  | 
            
          
            
              fresh  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446422 | IFNG.neg.Tconv.fresh.rep3  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127+CD25- Tconv  | 
            
          
            
              3  | 
            
          
            
              IFNg negative  | 
            
          
            
              fresh  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446423 | IFNG.neg.Tconv.fresh.rep4  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127+CD25- Tconv  | 
            
          
            
              4  | 
            
          
            
              IFNg negative  | 
            
          
            
              fresh  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446424 | IFNG.neg.Tconv.fresh.rep5  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127+CD25- Tconv  | 
            
          
            
              5  | 
            
          
            
              IFNg negative  | 
            
          
            
              fresh  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446425 | IFNG.pos.Tconv.fresh.rep1  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127+CD25- Tconv  | 
            
          
            
              1  | 
            
          
            
              IFNg positive  | 
            
          
            
              fresh  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446426 | IFNG.pos.Tconv.fresh.rep2  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127+CD25- Tconv  | 
            
          
            
              2  | 
            
          
            
              IFNg positive  | 
            
          
            
              fresh  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446427 | IFNG.pos.Tconv.fresh.rep3  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127+CD25- Tconv  | 
            
          
            
              3  | 
            
          
            
              IFNg positive  | 
            
          
            
              fresh  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446428 | IFNG.pos.Tconv.fresh.rep4  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127+CD25- Tconv  | 
            
          
            
              4  | 
            
          
            
              IFNg positive  | 
            
          
            
              fresh  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446429 | IFNG.pos.Tconv.fresh.rep5  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127+CD25- Tconv  | 
            
          
            
              5  | 
            
          
            
              IFNg positive  | 
            
          
            
              fresh  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446430 | IFNG.pos.Tconv.expanded.rep1  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127+CD25- Tconv  | 
            
          
            
              1  | 
            
          
            
              IFNg positive  | 
            
          
            
              14 day expansion  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446431 | IFNG.pos.Tconv.expanded.rep2  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127+CD25- Tconv  | 
            
          
            
              2  | 
            
          
            
              IFNg positive  | 
            
          
            
              14 day expansion  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446432 | IFNG.pos.Tconv.expanded.rep3  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127+CD25- Tconv  | 
            
          
            
              3  | 
            
          
            
              IFNg positive  | 
            
          
            
              14 day expansion  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446433 | IFNG.pos.Tconv.expanded.rep4  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127+CD25- Tconv  | 
            
          
            
              4  | 
            
          
            
              IFNg positive  | 
            
          
            
              14 day expansion  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446434 | IFNG.pos.Tconv.expanded.rep5  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127+CD25- Tconv  | 
            
          
            
              5  | 
            
          
            
              IFNg positive  | 
            
          
            
              14 day expansion  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446435 | IFNG.neg.Tconv.expanded.rep1  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127+CD25- Tconv  | 
            
          
            
              1  | 
            
          
            
              IFNg negative  | 
            
          
            
              14 day expansion  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446436 | IFNG.neg.Tconv.expanded.rep2  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127+CD25- Tconv  | 
            
          
            
              2  | 
            
          
            
              IFNg negative  | 
            
          
            
              14 day expansion  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446437 | IFNG.neg.Tconv.expanded.rep3  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127+CD25- Tconv  | 
            
          
            
              3  | 
            
          
            
              IFNg negative  | 
            
          
            
              14 day expansion  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446438 | IFNG.neg.Tconv.expanded.rep4  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127+CD25- Tconv  | 
            
          
            
              4  | 
            
          
            
              IFNg negative  | 
            
          
            
              14 day expansion  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446439 | IFNG.neg.Tconv.expanded.rep5  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127+CD25- Tconv  | 
            
          
            
              5  | 
            
          
            
              IFNg negative  | 
            
          
            
              14 day expansion  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446440 | IFNG.neg.Treg.expanded.rep1  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127-CD25+ Treg  | 
            
          
            
              1  | 
            
          
            
              IFNg negative  | 
            
          
            
              14 day expansion  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446441 | IFNG.neg.Treg.expanded.rep2  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127-CD25+ Treg  | 
            
          
            
              2  | 
            
          
            
              IFNg negative  | 
            
          
            
              14 day expansion  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446442 | IFNG.neg.Treg.expanded.rep3  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127-CD25+ Treg  | 
            
          
            
              3  | 
            
          
            
              IFNg negative  | 
            
          
            
              14 day expansion  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446443 | IFNG.neg.Treg.expanded.rep4  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127-CD25+ Treg  | 
            
          
            
              4  | 
            
          
            
              IFNg negative  | 
            
          
            
              14 day expansion  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446444 | IFNG.neg.Treg.expanded.rep5  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127-CD25+ Treg  | 
            
          
            
              5  | 
            
          
            
              IFNg negative  | 
            
          
            
              14 day expansion  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446445 | IFNG.pos.Treg.expanded.rep1  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127-CD25+ Treg  | 
            
          
            
              1  | 
            
          
            
              IFNg positive  | 
            
          
            
              14 day expansion  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446446 | IFNG.pos.Treg.expanded.rep2  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127-CD25+ Treg  | 
            
          
            
              2  | 
            
          
            
              IFNg positive  | 
            
          
            
              14 day expansion  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446447 | IFNG.pos.Treg.expanded.rep3  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127-CD25+ Treg  | 
            
          
            
              3  | 
            
          
            
              IFNg positive  | 
            
          
            
              14 day expansion  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446448 | IFNG.pos.Treg.expanded.rep4  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127-CD25+ Treg  | 
            
          
            
              4  | 
            
          
            
              IFNg positive  | 
            
          
            
              14 day expansion  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
| GSM1446449 | IFNG.pos.Treg.expanded.rep5  | 
            
          
            
              blood  | 
            
          
            
              CD4+CD127-CD25+ Treg  | 
            
          
            
              5  | 
            
          
            
              IFNg positive  | 
            
          
            
              14 day expansion  | 
            
          
            
              22-30 yrs  | 
            
          
            
              healthy  | 
            
          
        
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