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Clinical

Human IFNG+/- Treg and Tconv transcriptome-GSE59786

Purpose

Microarray used to detail the global gene transcription underlying sorted IFNg+ and IFNg- Tregs (CD4+CD25+CD127lo) and Tconv (CD4+CD25-CD127+) for fresh (unexpanded) and 14 day expanded cells from human blood.

Hypothesis

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Experimental Design

Treg and Tconv were FACS isolated from five healthy subjects (median age of 26, range 22-30). Sorted cells were separated into two groups: the first group was stimulated for 4 hours with PMA/ionomycin and labeled with the IFNg cytokine capture kit (Miltenyi Biotech) followed by FACS isolation of IFNg- and IFNg+ populations. The second set was expanded to day 14 prior to reactivation and cytokine cell capture. For each IFNg sorted population, cells were pelleted and flash frozen before RNA isolation and processing.

Experimental Variables

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Controls

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Methods

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Additional Information
  • Fuhrman CA, Yeh WI, Seay HR, Saikumar Lakshmi P et al. Divergent Phenotypes of Human Regulatory T Cells Expressing the Receptors TIGIT and CD226. J Immunol 2015 Jul 1;195(1):145-55. PMID: 25994968
  • Microarray
    Affymetrix HG-U133_Plus_2
    40 Samples Loaded: 40
    Human (Homo sapiens)
    Regulatory T Cells
    Healthy
    Sample Set Spreadsheet
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    Samples Preview
    Sample ID !Sample_title tissue cell type subject id cell subpopulation
    GSM1446410 IFNG.neg.Treg.fresh.rep1 blood CD4+CD127-CD25+ Treg 1 IFNg negative
    GSM1446411 IFNG.neg.Treg.fresh.rep2 blood CD4+CD127-CD25+ Treg 2 IFNg negative
    GSM1446412 IFNG.neg.Treg.fresh.rep3 blood CD4+CD127-CD25+ Treg 3 IFNg negative
    GSM1446413 IFNG.neg.Treg.fresh.rep4 blood CD4+CD127-CD25+ Treg 4 IFNg negative
    GSM1446414 IFNG.neg.Treg.fresh.rep5 blood CD4+CD127-CD25+ Treg 5 IFNg negative
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    Raw Signal
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    Sample ID !Sample Title Tissue Cell type Subject id Cell subpopulation Treatment group Subject age range Subject status
    GSM1446410
    IFNG.neg.Treg.fresh.rep1
    blood
    CD4+CD127-CD25+ Treg
    1
    IFNg negative
    fresh
    22-30 yrs
    healthy
    GSM1446411
    IFNG.neg.Treg.fresh.rep2
    blood
    CD4+CD127-CD25+ Treg
    2
    IFNg negative
    fresh
    22-30 yrs
    healthy
    GSM1446412
    IFNG.neg.Treg.fresh.rep3
    blood
    CD4+CD127-CD25+ Treg
    3
    IFNg negative
    fresh
    22-30 yrs
    healthy
    GSM1446413
    IFNG.neg.Treg.fresh.rep4
    blood
    CD4+CD127-CD25+ Treg
    4
    IFNg negative
    fresh
    22-30 yrs
    healthy
    GSM1446414
    IFNG.neg.Treg.fresh.rep5
    blood
    CD4+CD127-CD25+ Treg
    5
    IFNg negative
    fresh
    22-30 yrs
    healthy
    GSM1446415
    IFNG.pos.Treg.fresh.rep1
    blood
    CD4+CD127-CD25+ Treg
    1
    IFNg positive
    fresh
    22-30 yrs
    healthy
    GSM1446416
    IFNG.pos.Treg.fresh.rep2
    blood
    CD4+CD127-CD25+ Treg
    2
    IFNg positive
    fresh
    22-30 yrs
    healthy
    GSM1446417
    IFNG.pos.Treg.fresh.rep3
    blood
    CD4+CD127-CD25+ Treg
    3
    IFNg positive
    fresh
    22-30 yrs
    healthy
    GSM1446418
    IFNG.pos.Treg.fresh.rep4
    blood
    CD4+CD127-CD25+ Treg
    4
    IFNg positive
    fresh
    22-30 yrs
    healthy
    GSM1446419
    IFNG.pos.Treg.fresh.rep5
    blood
    CD4+CD127-CD25+ Treg
    5
    IFNg positive
    fresh
    22-30 yrs
    healthy
    GSM1446420
    IFNG.neg.Tconv.fresh.rep1
    blood
    CD4+CD127+CD25- Tconv
    1
    IFNg negative
    fresh
    22-30 yrs
    healthy
    GSM1446421
    IFNG.neg.Tconv.fresh.rep2
    blood
    CD4+CD127+CD25- Tconv
    2
    IFNg negative
    fresh
    22-30 yrs
    healthy
    GSM1446422
    IFNG.neg.Tconv.fresh.rep3
    blood
    CD4+CD127+CD25- Tconv
    3
    IFNg negative
    fresh
    22-30 yrs
    healthy
    GSM1446423
    IFNG.neg.Tconv.fresh.rep4
    blood
    CD4+CD127+CD25- Tconv
    4
    IFNg negative
    fresh
    22-30 yrs
    healthy
    GSM1446424
    IFNG.neg.Tconv.fresh.rep5
    blood
    CD4+CD127+CD25- Tconv
    5
    IFNg negative
    fresh
    22-30 yrs
    healthy
    GSM1446425
    IFNG.pos.Tconv.fresh.rep1
    blood
    CD4+CD127+CD25- Tconv
    1
    IFNg positive
    fresh
    22-30 yrs
    healthy
    GSM1446426
    IFNG.pos.Tconv.fresh.rep2
    blood
    CD4+CD127+CD25- Tconv
    2
    IFNg positive
    fresh
    22-30 yrs
    healthy
    GSM1446427
    IFNG.pos.Tconv.fresh.rep3
    blood
    CD4+CD127+CD25- Tconv
    3
    IFNg positive
    fresh
    22-30 yrs
    healthy
    GSM1446428
    IFNG.pos.Tconv.fresh.rep4
    blood
    CD4+CD127+CD25- Tconv
    4
    IFNg positive
    fresh
    22-30 yrs
    healthy
    GSM1446429
    IFNG.pos.Tconv.fresh.rep5
    blood
    CD4+CD127+CD25- Tconv
    5
    IFNg positive
    fresh
    22-30 yrs
    healthy
    GSM1446430
    IFNG.pos.Tconv.expanded.rep1
    blood
    CD4+CD127+CD25- Tconv
    1
    IFNg positive
    14 day expansion
    22-30 yrs
    healthy
    GSM1446431
    IFNG.pos.Tconv.expanded.rep2
    blood
    CD4+CD127+CD25- Tconv
    2
    IFNg positive
    14 day expansion
    22-30 yrs
    healthy
    GSM1446432
    IFNG.pos.Tconv.expanded.rep3
    blood
    CD4+CD127+CD25- Tconv
    3
    IFNg positive
    14 day expansion
    22-30 yrs
    healthy
    GSM1446433
    IFNG.pos.Tconv.expanded.rep4
    blood
    CD4+CD127+CD25- Tconv
    4
    IFNg positive
    14 day expansion
    22-30 yrs
    healthy
    GSM1446434
    IFNG.pos.Tconv.expanded.rep5
    blood
    CD4+CD127+CD25- Tconv
    5
    IFNg positive
    14 day expansion
    22-30 yrs
    healthy
    GSM1446435
    IFNG.neg.Tconv.expanded.rep1
    blood
    CD4+CD127+CD25- Tconv
    1
    IFNg negative
    14 day expansion
    22-30 yrs
    healthy
    GSM1446436
    IFNG.neg.Tconv.expanded.rep2
    blood
    CD4+CD127+CD25- Tconv
    2
    IFNg negative
    14 day expansion
    22-30 yrs
    healthy
    GSM1446437
    IFNG.neg.Tconv.expanded.rep3
    blood
    CD4+CD127+CD25- Tconv
    3
    IFNg negative
    14 day expansion
    22-30 yrs
    healthy
    GSM1446438
    IFNG.neg.Tconv.expanded.rep4
    blood
    CD4+CD127+CD25- Tconv
    4
    IFNg negative
    14 day expansion
    22-30 yrs
    healthy
    GSM1446439
    IFNG.neg.Tconv.expanded.rep5
    blood
    CD4+CD127+CD25- Tconv
    5
    IFNg negative
    14 day expansion
    22-30 yrs
    healthy
    GSM1446440
    IFNG.neg.Treg.expanded.rep1
    blood
    CD4+CD127-CD25+ Treg
    1
    IFNg negative
    14 day expansion
    22-30 yrs
    healthy
    GSM1446441
    IFNG.neg.Treg.expanded.rep2
    blood
    CD4+CD127-CD25+ Treg
    2
    IFNg negative
    14 day expansion
    22-30 yrs
    healthy
    GSM1446442
    IFNG.neg.Treg.expanded.rep3
    blood
    CD4+CD127-CD25+ Treg
    3
    IFNg negative
    14 day expansion
    22-30 yrs
    healthy
    GSM1446443
    IFNG.neg.Treg.expanded.rep4
    blood
    CD4+CD127-CD25+ Treg
    4
    IFNg negative
    14 day expansion
    22-30 yrs
    healthy
    GSM1446444
    IFNG.neg.Treg.expanded.rep5
    blood
    CD4+CD127-CD25+ Treg
    5
    IFNg negative
    14 day expansion
    22-30 yrs
    healthy
    GSM1446445
    IFNG.pos.Treg.expanded.rep1
    blood
    CD4+CD127-CD25+ Treg
    1
    IFNg positive
    14 day expansion
    22-30 yrs
    healthy
    GSM1446446
    IFNG.pos.Treg.expanded.rep2
    blood
    CD4+CD127-CD25+ Treg
    2
    IFNg positive
    14 day expansion
    22-30 yrs
    healthy
    GSM1446447
    IFNG.pos.Treg.expanded.rep3
    blood
    CD4+CD127-CD25+ Treg
    3
    IFNg positive
    14 day expansion
    22-30 yrs
    healthy
    GSM1446448
    IFNG.pos.Treg.expanded.rep4
    blood
    CD4+CD127-CD25+ Treg
    4
    IFNg positive
    14 day expansion
    22-30 yrs
    healthy
    GSM1446449
    IFNG.pos.Treg.expanded.rep5
    blood
    CD4+CD127-CD25+ Treg
    5
    IFNg positive
    14 day expansion
    22-30 yrs
    healthy

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