Human IFNG+/- Treg and Tconv transcriptome-GSE59786
Microarray used to detail the global gene transcription underlying sorted IFNg+ and IFNg- Tregs (CD4+CD25+CD127lo) and Tconv (CD4+CD25-CD127+) for fresh (unexpanded) and 14 day expanded cells from human blood.
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Treg and Tconv were FACS isolated from five healthy subjects (median age of 26, range 22-30). Sorted cells were separated into two groups: the first group was stimulated for 4 hours with PMA/ionomycin and labeled with the IFNg cytokine capture kit (Miltenyi Biotech) followed by FACS isolation of IFNg- and IFNg+ populations. The second set was expanded to day 14 prior to reactivation and cytokine cell capture. For each IFNg sorted population, cells were pelleted and flash frozen before RNA isolation and processing.
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Sample ID | !Sample_title | tissue | cell type | subject id | cell subpopulation |
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GSM1446410 | IFNG.neg.Treg.fresh.rep1 | blood | CD4+CD127-CD25+ Treg | 1 | IFNg negative |
GSM1446411 | IFNG.neg.Treg.fresh.rep2 | blood | CD4+CD127-CD25+ Treg | 2 | IFNg negative |
GSM1446412 | IFNG.neg.Treg.fresh.rep3 | blood | CD4+CD127-CD25+ Treg | 3 | IFNg negative |
GSM1446413 | IFNG.neg.Treg.fresh.rep4 | blood | CD4+CD127-CD25+ Treg | 4 | IFNg negative |
GSM1446414 | IFNG.neg.Treg.fresh.rep5 | blood | CD4+CD127-CD25+ Treg | 5 | IFNg negative |
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Sample ID | !Sample Title | Tissue | Cell type | Subject id | Cell subpopulation | Treatment group | Subject age range | Subject status |
---|---|---|---|---|---|---|---|---|
GSM1446410 | IFNG.neg.Treg.fresh.rep1 |
blood |
CD4+CD127-CD25+ Treg |
1 |
IFNg negative |
fresh |
22-30 yrs |
healthy |
GSM1446411 | IFNG.neg.Treg.fresh.rep2 |
blood |
CD4+CD127-CD25+ Treg |
2 |
IFNg negative |
fresh |
22-30 yrs |
healthy |
GSM1446412 | IFNG.neg.Treg.fresh.rep3 |
blood |
CD4+CD127-CD25+ Treg |
3 |
IFNg negative |
fresh |
22-30 yrs |
healthy |
GSM1446413 | IFNG.neg.Treg.fresh.rep4 |
blood |
CD4+CD127-CD25+ Treg |
4 |
IFNg negative |
fresh |
22-30 yrs |
healthy |
GSM1446414 | IFNG.neg.Treg.fresh.rep5 |
blood |
CD4+CD127-CD25+ Treg |
5 |
IFNg negative |
fresh |
22-30 yrs |
healthy |
GSM1446415 | IFNG.pos.Treg.fresh.rep1 |
blood |
CD4+CD127-CD25+ Treg |
1 |
IFNg positive |
fresh |
22-30 yrs |
healthy |
GSM1446416 | IFNG.pos.Treg.fresh.rep2 |
blood |
CD4+CD127-CD25+ Treg |
2 |
IFNg positive |
fresh |
22-30 yrs |
healthy |
GSM1446417 | IFNG.pos.Treg.fresh.rep3 |
blood |
CD4+CD127-CD25+ Treg |
3 |
IFNg positive |
fresh |
22-30 yrs |
healthy |
GSM1446418 | IFNG.pos.Treg.fresh.rep4 |
blood |
CD4+CD127-CD25+ Treg |
4 |
IFNg positive |
fresh |
22-30 yrs |
healthy |
GSM1446419 | IFNG.pos.Treg.fresh.rep5 |
blood |
CD4+CD127-CD25+ Treg |
5 |
IFNg positive |
fresh |
22-30 yrs |
healthy |
GSM1446420 | IFNG.neg.Tconv.fresh.rep1 |
blood |
CD4+CD127+CD25- Tconv |
1 |
IFNg negative |
fresh |
22-30 yrs |
healthy |
GSM1446421 | IFNG.neg.Tconv.fresh.rep2 |
blood |
CD4+CD127+CD25- Tconv |
2 |
IFNg negative |
fresh |
22-30 yrs |
healthy |
GSM1446422 | IFNG.neg.Tconv.fresh.rep3 |
blood |
CD4+CD127+CD25- Tconv |
3 |
IFNg negative |
fresh |
22-30 yrs |
healthy |
GSM1446423 | IFNG.neg.Tconv.fresh.rep4 |
blood |
CD4+CD127+CD25- Tconv |
4 |
IFNg negative |
fresh |
22-30 yrs |
healthy |
GSM1446424 | IFNG.neg.Tconv.fresh.rep5 |
blood |
CD4+CD127+CD25- Tconv |
5 |
IFNg negative |
fresh |
22-30 yrs |
healthy |
GSM1446425 | IFNG.pos.Tconv.fresh.rep1 |
blood |
CD4+CD127+CD25- Tconv |
1 |
IFNg positive |
fresh |
22-30 yrs |
healthy |
GSM1446426 | IFNG.pos.Tconv.fresh.rep2 |
blood |
CD4+CD127+CD25- Tconv |
2 |
IFNg positive |
fresh |
22-30 yrs |
healthy |
GSM1446427 | IFNG.pos.Tconv.fresh.rep3 |
blood |
CD4+CD127+CD25- Tconv |
3 |
IFNg positive |
fresh |
22-30 yrs |
healthy |
GSM1446428 | IFNG.pos.Tconv.fresh.rep4 |
blood |
CD4+CD127+CD25- Tconv |
4 |
IFNg positive |
fresh |
22-30 yrs |
healthy |
GSM1446429 | IFNG.pos.Tconv.fresh.rep5 |
blood |
CD4+CD127+CD25- Tconv |
5 |
IFNg positive |
fresh |
22-30 yrs |
healthy |
GSM1446430 | IFNG.pos.Tconv.expanded.rep1 |
blood |
CD4+CD127+CD25- Tconv |
1 |
IFNg positive |
14 day expansion |
22-30 yrs |
healthy |
GSM1446431 | IFNG.pos.Tconv.expanded.rep2 |
blood |
CD4+CD127+CD25- Tconv |
2 |
IFNg positive |
14 day expansion |
22-30 yrs |
healthy |
GSM1446432 | IFNG.pos.Tconv.expanded.rep3 |
blood |
CD4+CD127+CD25- Tconv |
3 |
IFNg positive |
14 day expansion |
22-30 yrs |
healthy |
GSM1446433 | IFNG.pos.Tconv.expanded.rep4 |
blood |
CD4+CD127+CD25- Tconv |
4 |
IFNg positive |
14 day expansion |
22-30 yrs |
healthy |
GSM1446434 | IFNG.pos.Tconv.expanded.rep5 |
blood |
CD4+CD127+CD25- Tconv |
5 |
IFNg positive |
14 day expansion |
22-30 yrs |
healthy |
GSM1446435 | IFNG.neg.Tconv.expanded.rep1 |
blood |
CD4+CD127+CD25- Tconv |
1 |
IFNg negative |
14 day expansion |
22-30 yrs |
healthy |
GSM1446436 | IFNG.neg.Tconv.expanded.rep2 |
blood |
CD4+CD127+CD25- Tconv |
2 |
IFNg negative |
14 day expansion |
22-30 yrs |
healthy |
GSM1446437 | IFNG.neg.Tconv.expanded.rep3 |
blood |
CD4+CD127+CD25- Tconv |
3 |
IFNg negative |
14 day expansion |
22-30 yrs |
healthy |
GSM1446438 | IFNG.neg.Tconv.expanded.rep4 |
blood |
CD4+CD127+CD25- Tconv |
4 |
IFNg negative |
14 day expansion |
22-30 yrs |
healthy |
GSM1446439 | IFNG.neg.Tconv.expanded.rep5 |
blood |
CD4+CD127+CD25- Tconv |
5 |
IFNg negative |
14 day expansion |
22-30 yrs |
healthy |
GSM1446440 | IFNG.neg.Treg.expanded.rep1 |
blood |
CD4+CD127-CD25+ Treg |
1 |
IFNg negative |
14 day expansion |
22-30 yrs |
healthy |
GSM1446441 | IFNG.neg.Treg.expanded.rep2 |
blood |
CD4+CD127-CD25+ Treg |
2 |
IFNg negative |
14 day expansion |
22-30 yrs |
healthy |
GSM1446442 | IFNG.neg.Treg.expanded.rep3 |
blood |
CD4+CD127-CD25+ Treg |
3 |
IFNg negative |
14 day expansion |
22-30 yrs |
healthy |
GSM1446443 | IFNG.neg.Treg.expanded.rep4 |
blood |
CD4+CD127-CD25+ Treg |
4 |
IFNg negative |
14 day expansion |
22-30 yrs |
healthy |
GSM1446444 | IFNG.neg.Treg.expanded.rep5 |
blood |
CD4+CD127-CD25+ Treg |
5 |
IFNg negative |
14 day expansion |
22-30 yrs |
healthy |
GSM1446445 | IFNG.pos.Treg.expanded.rep1 |
blood |
CD4+CD127-CD25+ Treg |
1 |
IFNg positive |
14 day expansion |
22-30 yrs |
healthy |
GSM1446446 | IFNG.pos.Treg.expanded.rep2 |
blood |
CD4+CD127-CD25+ Treg |
2 |
IFNg positive |
14 day expansion |
22-30 yrs |
healthy |
GSM1446447 | IFNG.pos.Treg.expanded.rep3 |
blood |
CD4+CD127-CD25+ Treg |
3 |
IFNg positive |
14 day expansion |
22-30 yrs |
healthy |
GSM1446448 | IFNG.pos.Treg.expanded.rep4 |
blood |
CD4+CD127-CD25+ Treg |
4 |
IFNg positive |
14 day expansion |
22-30 yrs |
healthy |
GSM1446449 | IFNG.pos.Treg.expanded.rep5 |
blood |
CD4+CD127-CD25+ Treg |
5 |
IFNg positive |
14 day expansion |
22-30 yrs |
healthy |
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