Sample Set Annotation Tool: Main Listing

Sample Set	Species	Disease	Sample Source	Sample Count
GSE44722-GPL6947_series_matrix				77
GSE44722-GPL10558_series_matrix				336
IFNa DCs and IL4 DCs exposed to H1N1, heat killed S. aureus, or heat killed S. enterica (HKSE) for 1h, 2h, 6h, 12h, or 24h-GSE44720	Homo sapiens	Healthy	Dendritic Cells	120
IFNa and IL4 DCs stimulated with microbial components for 6hr-GSE44719	Homo sapiens	Healthy	Dendritic Cells	77
Expression data from Treg subsets sorted from healthy human peripheral blood-GSE64176 - Treg&Teff Day1	Homo sapiens	Healthy	Regulatory T Cells	12
Human IFNG+/- Treg and Tconv transcriptome-GSE59786	Homo sapiens	Healthy	Regulatory T Cells	40
Gene expression profiling of effector and regulatory T-cells from peripheral blood of rheumatoid arthritis (RA) patients and healthy volunteers-GSE65010	Homo sapiens	Rheumatoid Arthritis	Regulatory T Cells	48
Expression data from Treg subsets sorted from healthy human peripheral blood-GSE64176	Homo sapiens	Healthy	Regulatory T Cells	124
Expression data for human epithelium from subjects with atopic dermatitis, psoriasis and nonatopic controls-GSE26952	Homo sapiens	Psoriasis	Epithelium	16
Genome-wide profiling of whole blood from patients with defects in Toll-like receptors and IL-1Rs signaling-GSE25742 - MYD88 patient	Homo sapiens	Primary Immunodeficiency	Whole Blood	72
Genome-wide profiling of whole blood from patients with defects in Toll-like receptors and IL-1Rs signaling-GSE25742 - IRAK4 patient	Homo sapiens	Primary Immunodeficiency	Whole Blood	68
Genome-wide profiling of whole blood from patients with defects in Toll-like receptors and IL-1Rs signaling-GSE25742 - Healthy control_1	Homo sapiens	Primary Immunodeficiency	Whole Blood	225
Profiling of naïve and memory Tregs-GSE76598	Homo sapiens	Healthy	Regulatory T Cells	52
Genome-wide profiling of whole blood from patients with defects in Toll-like receptors and IL-1Rs signaling-GSE25742	Homo sapiens	Primary Immunodeficiency	Whole Blood	365
Analysis of the impact of the method of cell selection on the gene expression profile of human CD4 and CD8 T cells-GSE14926	Homo sapiens	Healthy	CD4 T cells, CD8 T cells	19
Gene expression data of skin from psoriatic patients and normal controls - GSE13355				180
GSE30999_family				170
GSE62947_Testing_Only				6
GSE62947_Testing_Only - cell line-ARPE-19				6
GSE46268_family				12
GSE65517_family				13
GSE55503_family				12
GSE64670_family				12
GSE66346_family				9
GSE65018_family				8
GSE49753_family				40
GSE49754_family				40
GSE49755_family				40
GSE49756_family				49
GSE49757_family				56
GSE49758_family				225
GSE40719_family - All Samples	Homo sapiens			96
GSE7900_family				3
GSM67046_test				2
GSM67046_Plain_Data_Format				1
GSM67046_GE_Data				2
GSM67046_Gen_Exp_Data				2
GSE54077_series_matrix				7
Testing_File				2
Merge_70898_70900_series				24
With_Zero				112
RNAseq: Cell Immune-GSE60424	Homo sapiens		CD4 T cells, NK Cells ...	134
Expression data of A2EN cells during early stage of Chlamydia trachomatis infection-GSE54336	Homo sapiens	Chlamydia trachomatis inf ...		6
Peripheral blood cells expression data form 7 patients with severe pdm(H1N1) influensa and 7 gender and age matched healthy controls-GSE27131	Homo sapiens	H1N1	Peripheral blood	21
Blood Transcriptional Profiles of TB in South Africa-GSE19442	Homo sapiens	Tuberculosis	Whole Blood	51
The genomic architecture of host whole blood transcriptional response to malaria infection-GSE34404	Homo sapiens	Malaria	Whole Blood	155
Genomic Transcriptional Profiling Identifies a Blood Biomarker Signature for the Diagnosis of Septicemic Melioidosis-GSE13015-Healthy-Melioidosis-Other Sepsis-T2D-Recovery	Homo sapiens	Sepsis	Whole Blood	67
Genomic Transcriptional Profiling Identifies a Blood Biomarker Signature for the Diagnosis of Septicemic Melioidosis-GSE13015-Healthy-Melioidosis-Other Sepsis-T2D	Homo sapiens	Sepsis	Whole Blood	39
Gene expression patterns in blood leukocytes discriminate patients with acute infections-GSE6269-Healthy-Influenza-S. aureus-S. pneumoniae-E. coli	Homo sapiens	Acute Infections	PBMC	97
Gene expression patterns in blood leukocytes discriminate patients with acute infections-GSE6269-Influenza-S. aureus-S. pneumoniae	Homo sapiens	Acute Infections	PBMC	22
Enhanced Monocyte Response & Decreased Central Memory T Cells in Children with Invasive Staphylococcus aureus Infections-GSE16129	Homo sapiens	Staphylococcus aureus	PBMC	56
Enhanced Monocyte Response & Decreased Central Memory T Cells in Children with Invasive Staphylococcus aureus Infections-GSE16129-GPL97	Homo sapiens	Staphylococcus aureus	PBMC	52
Enhanced Monocyte Response & Decreased Central Memory T Cells in Children with Invasive Staphylococcus aureus Infections-GSE16129-GPL6106	Homo sapiens	Staphylococcus aureus	PBMC	18
GSE27131_family				21
Genome-wide analysis of whole blood transcriptional response to community-acquired Staphylococcus aureus infection in vivo-GSE30119	Homo sapiens	Staphylococcus aureus	Whole Blood	143
Whole blood transcriptional profiles of patients with active tuberculosis (TB) and other inflammatory and infectious diseases-GSE22098	Homo sapiens	Tuberculosis	Whole Blood	274
NGS_Plain_Signal_Data				1
GSE61399_family2				29
Multiparameter Immune Profiling of Operational Tolerance in Liver Transplantation-GSE11881	Homo sapiens	Liver Transplantation	PBMC	17
Molecular changes in kidney allografts after simultaneous liver-kidney compared with solitary kidney transplantation-GSE97780	Homo sapiens	Liver and Kidney Transpla ...	Biopsy, Kidney Biopsy ...	52
Role of HCV-induced immune responses on the establishment of operational tolerance following liver transplantation in humans-GSE52420	Homo sapiens	Liver Transplant	Liver Biopsy	50
Whole Blood Transcriptional Modules generated on Illumina Hu-6 V2 Beadchips-GSE29536	Homo sapiens	Liver Transplant	Whole Blood	410
GENE-EXPRESSION PROFILES OF HUMAN LIVER BIOPSIES CORRELATE WITH POST-TRANSPLANT ALLOGRAFT FUNCTION AND ARE DETERMINED BY DONOR TYPE-GSE23649	Homo sapiens	Liver Transplant	Liver Tissue	69
Liver Regeneration Gene Signature in Hepatitis B virus (HBV)-Associated Acute Liver Failure Identified by Gene Expression Profiling - GSE38941	Homo sapiens	Liver Transplant	Liver Biopsy	27
A Common Peripheral Blood Gene-Set for Diagnosis and Prediction of Operational Tolerance in Pediatric and Adult Liver Transplantation - GSE30886	Homo sapiens	Liver Transplant	Peripheral blood	41
Withdrawal of immunosuppressive therapy in stable liver transplant recipients-GSE28842	Homo sapiens	Liver Transplant	PBMC	71
MOLECULAR CHARACTERIZATION OF LIVER ALLOGRAFTS FROM OPERATIONALLY TOLERANT TRANSPLANT RECIPIENTS (Affymetrix)- GSE26622	Homo sapiens	Liver Transplant	Liver Biopsy	24
MOLECULAR CHARACTERIZATION OF LIVER ALLOGRAFTS FROM OPERATIONALLY TOLERANT TRANSPLANT RECIPIENTS (Illumina) - GSE26625	Homo sapiens	Liver Transplant	Liver Biopsy	110
Gene expression profile in human orthotopic liver transplantation - GSE14951	Homo sapiens	Liver Transplant	Liver Biopsy	15
Unique early gene expression patterns in adult to adult living donor liver grafts compared to deceased donor grafts -GSE12720	Homo sapiens	Healthy	RNA	63
Construction of a modular analysis framework for blood Genomics Studies-GSE11908-GPL97	Homo sapiens	Liver Transplant	PBMC	235
A common rejection module for acute rejection in multiple organs identifies novel therapeutics - GSE50058	Homo sapiens	Kidney Transplant	Renal Allograft Biopsy	101
Construction of a modular analysis framework for blood Genomics Studies-GSE11908-GPL96	Homo sapiens	Liver Transplant	PBMC	236
Molecular Characterization of Acute Cellular Rejection Occurring during Intentional Immunosuppression Withdrawal in Liver Transplantation-GSE70305	Homo sapiens	Liver Transplant	Peripheral Vein Blood	74
Early transcriptional programming links progression to hepatitis C virus-induced severe liver disease in transplant patients -GSE34798	Homo sapiens	Liver Transplant	Liver Biopsy	459
Multiparameter Immune Profiling Operational Tolerance in Liver Transplantation-GSE11881	Homo sapiens	Liver Transplantation	PBMC	17
Multiparameter Immune Profiling of Operational Tolerance in Liver Transplantation GSE11881	Homo sapiens	Liver Transplant	PBMC	17
Whole Blood Transcriptional Modules generated on Illumna Hu-6 V2 Beadchips-GSE29536	Homo sapiens	Liver Transplantation	Whole Blood	410
Unique early gene expression patterns in adult to adult living donor liver grafts compared to deceased donor grafts -GSE12720 - All Samples	Homo sapiens	Healthy	RNA	63
Unique early gene expression patterns in adult to adult living donor liver grafts compared to deceased donor grafts -GSE12720.	Homo sapiens	Liver Transplant	Liver Biopsy	63
GSE29536_family	Homo sapiens	Liver Transplant	Whole Blood	410
Whole Blood Transcriptional Modules generated on Illumina Hu-6 V2 Beadchip - GSE29536	Homo sapiens	Liver Transplant	Whole Blood	410
raw_counts1				134
TestingTesting_GSE52742				2
Unique inflammatory transcriptome profiles at the maternal fetal interface and onset of human preterm and term birth-GSE73685	Homo sapiens	Pregnancy	Cord blood, Chorion ...	183
Early Pregnancy Gene Expression Profiling of Women with Preeclampsia: The “Vitamin D Antenatal Asthma Reduction Trial” (VDAART) Study-GSE85307-GPL6244	Homo sapiens	Pregnancy	Whole Blood	157
Pregnancy changes expression in peripheral blood mononuclear cells of healthy donors -GSE17409	Homo sapiens	Pregnancy	PBMC	11
Pregnancy changes expression in peripheral blood mononuclear cells of Multiple Sclerosis (MS) patients-GSE17410	Homo sapiens	Pregnancy	PBMC	17
Severe preeclampsia: new blood circulating biomarkers-GSE48424	Homo sapiens	Pregnancy	Whole Blood	36
Comprehensive Study of Tobacco Smoke-Related Transcriptome Alterations in Maternal and Fetal Cells-GSE27272	Homo sapiens	Pregnancy	Cord blood ...	183
Maternal influences on the transmission of leukocyte gene expression profiles in population samples (mother and child)-GSE21342	Homo sapiens	Pregnancy	Umbilical Cord Blood ...	56
The role of vitamin D in the transcriptional program of human pregnancy-GSE86200	Homo sapiens	Pregnancy	Whole Blood	60
In vitro: Whole blood stimulation- GSE30101	Homo sapiens	Healthy	Whole Blood	80
Maternal Whole Blood Gene Expression at 18 and 28 weeks of Gestation Associated with Spontaneous Preterm Birth in Asymptomatic Women-GSE59491	Homo sapiens	Pregnancy	Whole Blood	326
Blood immunomonitoring uncovers pregnancy-induced immune programs and their dysregulation in lupus pregnancy destined for complications-GSE108497	Homo sapiens	Pregnancy	Whole Blood	543
CHANGES IN THE HUMAN TRANSCRIPTOME UPON VITAMIN D SUPPLEMENTATION-GSE94138	Homo sapiens	Vitamin D	Whole Blood	94
CHANGES IN THE HUMAN TRANSCRIPTOME UPON VITAMIN D SUPPLEMENTATION-GSE94138 - sample_month_date-3	Homo sapiens	Vitamin D	Whole Blood	15
PBMC transcriptional signature of IBD GSE71730				47
A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (HIV Datasets)-GSE100151	Homo sapiens	HIV	Whole Blood	63
A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (COPD Datasets) - GSE100153	Homo sapiens	COPD	Whole Blood	43
A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (Juvenile Dermatomyositis Datasets)-GSE100152		Juvenile Dermatomyositis	Whole Blood	49
A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (Kawasaki Datasets)-GSE100154	Homo sapiens	Kawasaki Disease	Whole Blood	44
A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (B-cell deficiency Datasets)-GSE100156	Homo sapiens	B-Cell Deficiency	Whole Blood	33
A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (Pregnancy Datasets)-GSE100157	Homo sapiens	Pregnancy	Whole Blood	45
A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (Melanoma Datasets)-GSE100158	Homo sapiens	Melanoma	Whole Blood	27
A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (Sepsis Datasets)-GSE100159	Homo sapiens	Sepsis	Whole Blood	47
A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (Flu Datasets)-GSE100160	Homo sapiens	Flu	Whole Blood	39
A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (RSV Datasets)-GSE100161	Homo sapiens	RSV	Whole Blood	84
A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (MS Datasets)-GSE100162	Homo sapiens	MS	Whole Blood	56
A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (SLE Datasets)-GSE100163	Homo sapiens	Pediatric SLE	Whole Blood	69
A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (SoJIA Datasets)-GSE100164	Homo sapiens	SoJIA	Whole Blood	85
A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (Staph Datasets)-GSE100165	Homo sapiens	Staph	Whole Blood	143
A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (TB Datasets)-GSE100166	Homo sapiens	Tuberculosis	Whole Blood	34
A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (Liver Transplant Datasets)-GSE100155	Homo sapiens	Liver Transplant	Whole Blood	124
GSE147507_Merge_data.matrix_v1_Probe_TXT_v2				51
GSE147507_Merge_data.matrix_v1_Probe_TXT_v3				78
Transcriptional response to SARS-CoV-2 infection- GSE147507_v1	Homo sapiens	SARS-CoV-2	Lung, Lung Biopsy ...	78
GSE97287_series_matrix_reupload				19
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