Sample Set Annotation Tool: GSE49754

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Expected Samples:

40 Samples Loaded: 40

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Sample Set Spreadsheet

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Sample ID	Gender	!Sample_title	cell type	bacterial identification	activators
GSM1206458	Male	H2-PBMC-Bp2	PBMC	Burkholderia pseudomallei	Septic plasma
GSM1206459	Female	H2-PBMC-Ot2	PBMC	Streptococcus pnumoniae	Septic plasma
GSM1206460	Male	H1-PBMC-HC6	PBMC	-	Uninfected plasma
GSM1206461	Male	H2-PBMC-Bp4	PBMC	Burkholderia pseudomallei	Septic plasma
GSM1206462	Female	H1-PBMC-Ot2	PBMC	Streptococcus pnumoniae	Septic plasma

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Sample ID	Gender	!Sample Title	Cell type	Bacterial identification	Activators	Day of blood collection	Age (years)	Experiment	Donors	Severity	Sample id
GSM1206458	Male	H2-PBMC-Bp2	PBMC	Burkholderia pseudomallei	Septic plasma	22	50	I	H2	Severe	Bp2
GSM1206459	Female	H2-PBMC-Ot2	PBMC	Streptococcus pnumoniae	Septic plasma	0	60	I	H2	Severe	Ot2
GSM1206460	Male	H1-PBMC-HC6	PBMC	-	Uninfected plasma	-	56	I	H1	-	HC6
GSM1206461	Male	H2-PBMC-Bp4	PBMC	Burkholderia pseudomallei	Septic plasma	3	66	I	H2	Severe	Bp4
GSM1206462	Female	H1-PBMC-Ot2	PBMC	Streptococcus pnumoniae	Septic plasma	0	60	I	H1	Severe	Ot2
GSM1206463	Female	H2-PBMC-HC3	PBMC	-	Uninfected plasma	-	57	I	H2	-	HC3
GSM1206464	Male	H2-PBMC-HC6	PBMC	-	Uninfected plasma	-	56	I	H2	-	HC6
GSM1206465	Male	H1-PBMC-Bp3	PBMC	Burkholderia pseudomallei	Septic plasma	2	72	I	H1	Severe	Bp3
GSM1206466	Male	H2-PBMC-Bp5	PBMC	Burkholderia pseudomallei	Septic plasma	3	85	I	H2	Non-severe	Bp5
GSM1206467	Female	H1-PBMC-Ot5	PBMC	Pseudomonas aeruginosa	Septic plasma	0	77	I	H1	Severe	Ot5
GSM1206468	Female	H1-PBMC-Ot3	PBMC	Enterococus faecium	Septic plasma	0	54	I	H1	Severe	Ot3
GSM1206469	-	H1-PBMC-LPS1	PBMC	-	LPS	-	-	I	H1	-	LPS
GSM1206470	Female	H2-PBMC-Ot4	PBMC	Klebsiella pneumoniae	Septic plasma	1	74	I	H2	Severe	Ot4
GSM1206471	Female	H1-PBMC-Ot6	PBMC	Escherichia coli (ESBL)	Septic plasma	30	70	I	H1	Severe	Ot6
GSM1206472	Female	H2-PBMC-HC4	PBMC	-	Uninfected plasma	-	64	I	H2	-	HC4
GSM1206473	Male	H2-PBMC-Ot1	PBMC	Streptococcus pnumoniae	Septic plasma	0	24	I	H2	Severe	Ot1
GSM1206474	Female	H1-PBMC-HC3	PBMC	-	Uninfected plasma	-	57	I	H1	-	HC3
GSM1206475	-	H2-PBMC-LPS1	PBMC	-	LPS	-	-	I	H2	-	LPS
GSM1206476	Male	H1-PBMC-Bp6	PBMC	Burkholderia pseudomallei	Septic plasma	4	44	I	H1	Severe	Bp6
GSM1206477	Male	H2-PBMC-Bp1	PBMC	Burkholderia pseudomallei	Septic plasma	1	57	I	H2	Severe	Bp1
GSM1206478	Male	H1-PBMC-HC5	PBMC	-	Uninfected plasma	-	56	I	H1	-	HC5
GSM1206479	Female	H2-PBMC-Ot6	PBMC	Escherichia coli (ESBL)	Septic plasma	30	70	I	H2	Severe	Ot6
GSM1206480	Female	H1-PBMC-HC4	PBMC	-	Uninfected plasma	-	64	I	H1	-	HC4
GSM1206481	Male	H2-PBMC-HC1	PBMC	-	Uninfected plasma	-	59	I	H2	-	HC1
GSM1206482	-	H1-PBMC-M1	PBMC	-	Medium alone	-	-	I	H1	-	M1
GSM1206483	Male	H2-PBMC-Bp6	PBMC	Burkholderia pseudomallei	Septic plasma	4	44	I	H2	Severe	Bp6
GSM1206484	Male	H1-PBMC-Ot1	PBMC	Streptococcus pnumoniae	Septic plasma	0	24	I	H1	Severe	Ot1
GSM1206485	-	H2-PBMC-M1	PBMC	-	Medium alone	-	-	I	H2	-	M1
GSM1206486	Male	H1-PBMC-HC1	PBMC	-	Uninfected plasma	-	59	I	H1	-	HC1
GSM1206487	Female	H2-PBMC-Ot3	PBMC	Enterococus faecium	Septic plasma	0	54	I	H2	Severe	Ot3
GSM1206488	Male	H1-PBMC-Bp1	PBMC	Burkholderia pseudomallei	Septic plasma	1	57	I	H1	Severe	Bp1
GSM1206489	Male	H1-PBMC-HC2	PBMC	-	Uninfected plasma	-	60	I	H1	-	HC2
GSM1206490	Male	H2-PBMC-Bp3	PBMC	Burkholderia pseudomallei	Septic plasma	2	72	I	H2	Severe	Bp3
GSM1206491	Female	H2-PBMC-Ot5	PBMC	Pseudomonas aeruginosa	Septic plasma	0	77	I	H2	Severe	Ot5
GSM1206492	Male	H1-PBMC-Bp4	PBMC	Burkholderia pseudomallei	Septic plasma	3	66	I	H1	Severe	Bp4
GSM1206493	Male	H2-PBMC-HC5	PBMC	-	Uninfected plasma	-	56	I	H2	-	HC5
GSM1206494	Male	H1-PBMC-Bp2	PBMC	Burkholderia pseudomallei	Septic plasma	22	50	I	H1	Severe	Bp2
GSM1206495	Female	H1-PBMC-Ot4	PBMC	Klebsiella pneumoniae	Septic plasma	1	74	I	H1	Severe	Ot4
GSM1206496	Male	H2-PBMC-HC2	PBMC	-	Uninfected plasma	-	60	I	H2	-	HC2
GSM1206497	Male	H1-PBMC-Bp5	PBMC	Burkholderia pseudomallei	Septic plasma	3	85	I	H1	Non-severe	Bp5

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SIDRA

Sample Set Annotation Tool

GSE49754_family

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Hypothesis

Experimental Design

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SIDRA

Sample Set Annotation Tool

GSE49754_family

Purpose

Hypothesis

Experimental Design

Experimental Variables

Controls

Methods

Additional Information

Sample Set Spreadsheet

Samples Preview

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