Sample Set Annotation Tool: GSE49755

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Expected Samples:

40 Samples Loaded: 40

Species

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Extraction Protocol

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Sample Set Spreadsheet

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Sample ID	Gender	!Sample_title	cell type	bacterial identification	activators
GSM1206498	Male	H2-PMN-HC6	neutrophil	-	Uninfected plasma
GSM1206499	Female	H1-PMN-Ot3	neutrophil	Enterococus faecium	Septic plasma
GSM1206500	Male	H2-PMN-Bp6	neutrophil	Burkholderia pseudomallei	Septic plasma
GSM1206501	Male	H1-PMN-HC1	neutrophil	-	Uninfected plasma
GSM1206502	Female	H2-PMN-Ot3	neutrophil	Enterococus faecium	Septic plasma

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Sample ID	Gender	!Sample Title	Cell type	Bacterial identification	Activators	Day of blood collection	Age (years)	Experiment	Donors	Severity	Sample id
GSM1206498	Male	H2-PMN-HC6	neutrophil	-	Uninfected plasma	-	56	I	H2	-	HC6
GSM1206499	Female	H1-PMN-Ot3	neutrophil	Enterococus faecium	Septic plasma	0	54	I	H1	Severe	Ot3
GSM1206500	Male	H2-PMN-Bp6	neutrophil	Burkholderia pseudomallei	Septic plasma	4	44	I	H2	Severe	Bp6
GSM1206501	Male	H1-PMN-HC1	neutrophil	-	Uninfected plasma	-	59	I	H1	-	HC1
GSM1206502	Female	H2-PMN-Ot3	neutrophil	Enterococus faecium	Septic plasma	0	54	I	H2	Severe	Ot3
GSM1206503	Female	H1-PMN-Ot6	neutrophil	Escherichia coli (ESBL)	Septic plasma	30	70	I	H1	Severe	Ot6
GSM1206504	Female	H2-PMN-HC4	neutrophil	-	Uninfected plasma	-	64	I	H2	-	HC4
GSM1206505	-	H1-PMN-M1	neutrophil	-	Medium alone	-	-	I	H1	-	M1
GSM1206506	-	H2-PMN-M1	neutrophil	-	Medium alone	-	-	I	H2	-	M1
GSM1206507	Male	H1-PMN-Ot1	neutrophil	Streptococcus pnumoniae	Septic plasma	0	24	I	H1	Severe	Ot1
GSM1206508	-	H2-PMN-LPS1	neutrophil	-	LPS	-	-	I	H2	-	LPS
GSM1206509	Male	H1-PMN-Bp6	neutrophil	Burkholderia pseudomallei	Septic plasma	4	44	I	H1	Severe	Bp6
GSM1206510	Female	H2-PMN-Ot6	neutrophil	Escherichia coli (ESBL)	Septic plasma	30	70	I	H2	Severe	Ot6
GSM1206511	Female	H1-PMN-HC4	neutrophil	-	Uninfected plasma	-	64	I	H1	-	HC4
GSM1206512	Male	H2-PMN-Bp5	neutrophil	Burkholderia pseudomallei	Septic plasma	3	85	I	H2	Non-severe	Bp5
GSM1206513	Female	H1-PMN-Ot4	neutrophil	Klebsiella pneumoniae	Septic plasma	1	74	I	H1	Severe	Ot4
GSM1206514	Male	H1-PMN-Bp4	neutrophil	Burkholderia pseudomallei	Septic plasma	3	66	I	H1	Severe	Bp4
GSM1206515	Male	H2-PMN-HC2	neutrophil	-	Uninfected plasma	-	60	I	H2	-	HC2
GSM1206516	Male	H1-PMN-HC5	neutrophil	-	Uninfected plasma	-	56	I	H1	-	HC5
GSM1206517	Male	H1-PMN-Bp2	neutrophil	Burkholderia pseudomallei	Septic plasma	22	50	I	H1	Severe	Bp2
GSM1206518	Male	H2-PMN-Bp1	neutrophil	Burkholderia pseudomallei	Septic plasma	1	57	I	H2	Severe	Bp1
GSM1206519	Male	H2-PMN-HC5	neutrophil	-	Uninfected plasma	-	56	I	H2	-	HC5
GSM1206520	Male	H1-PMN-Bp1	neutrophil	Burkholderia pseudomallei	Septic plasma	1	57	I	H1	Severe	Bp1
GSM1206521	Male	H1-PMN-Bp5	neutrophil	Burkholderia pseudomallei	Septic plasma	3	85	I	H1	Non-severe	Bp5
GSM1206522	Male	H2-PMN-Ot1	neutrophil	Streptococcus pnumoniae	Septic plasma	0	24	I	H2	Severe	Ot1
GSM1206523	Male	H2-PMN-Bp2	neutrophil	Burkholderia pseudomallei	Septic plasma	22	50	I	H2	Severe	Bp2
GSM1206524	-	H1-PMN-LPS1	neutrophil	-	LPS	-	-	I	H1	-	LPS
GSM1206525	Male	H2-PMN-Bp4	neutrophil	Burkholderia pseudomallei	Septic plasma	3	66	I	H2	Severe	Bp4
GSM1206526	Male	H1-PMN-Bp3	neutrophil	Burkholderia pseudomallei	Septic plasma	2	72	I	H1	Severe	Bp3
GSM1206527	Female	H2-PMN-HC3	neutrophil	-	Uninfected plasma	-	57	I	H2	-	HC3
GSM1206528	Male	H1-PMN-HC6	neutrophil	-	Uninfected plasma	-	56	I	H1	-	HC6
GSM1206529	Male	H2-PMN-HC1	neutrophil	-	Uninfected plasma	-	59	I	H2	-	HC1
GSM1206530	Female	H1-PMN-Ot2	neutrophil	Streptococcus pnumoniae	Septic plasma	0	60	I	H1	Severe	Ot2
GSM1206531	Male	H2-PMN-Bp3	neutrophil	Burkholderia pseudomallei	Septic plasma	2	72	I	H2	Severe	Bp3
GSM1206532	Female	H1-PMN-HC3	neutrophil	-	Uninfected plasma	-	57	I	H1	-	HC3
GSM1206533	Female	H2-PMN-Ot4	neutrophil	Klebsiella pneumoniae	Septic plasma	1	74	I	H2	Severe	Ot4
GSM1206534	Female	H1-PMN-Ot5	neutrophil	Pseudomonas aeruginosa	Septic plasma	0	77	I	H1	Severe	Ot5
GSM1206535	Female	H2-PMN-Ot5	neutrophil	Pseudomonas aeruginosa	Septic plasma	0	77	I	H2	Severe	Ot5
GSM1206536	Male	H1-PMN-HC2	neutrophil	-	Uninfected plasma	-	60	I	H1	-	HC2
GSM1206537	Female	H2-PMN-Ot2	neutrophil	Streptococcus pnumoniae	Septic plasma	0	60	I	H2	Severe	Ot2

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SIDRA

Sample Set Annotation Tool

GSE49755_family

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SIDRA

Sample Set Annotation Tool

GSE49755_family

Purpose

Hypothesis

Experimental Design

Experimental Variables

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Methods

Additional Information

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