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Clinical

Multiparameter Immune Profiling of Operational Tolerance in Liver Transplantation-GSE11881

Purpose

Immunosuppressive drugs can be completely withdrawn in up to 20% of liver transplant recipients, commonly referred to as ‘operationally’ tolerant. Immune characterization of these patients, however, has not been performed in detail, and we lack tests capable of identifying tolerant patients among recipients receiving maintenance immunosuppression. In the current study we have analyzed a variety of biological traits in peripheral blood of operationally tolerant liver recipients in an attempt to define a multiparameter ‘fingerprint’ of tolerance. Thus, we have performed peripheral blood gene expression profiling and extensive blood cell immunophenotyping on 16 operationally tolerant liver recipients, 16 recipients requiring on-going immunosuppressive therapy, and 10 healthy individuals. Microarray profiling identified a gene expression signature that could discriminate tolerant recipients from immunosuppression-dependent patients with high accuracy. This signature included genes encoding for ?d T-cell and NK receptors, and for proteins involved in cell proliferation arrest. In addition, tolerant recipients exhibited significantly greater numbers of circulating potentially regulatory T-cell subsets (CD4+CD25+ T-cells and Vd1+ T cells) than either non-tolerant patients or healthy individuals. Our data provide novel mechanistic insight on liver allograft operational tolerance, and constitute a first step in the search for a non-invasive diagnostic signature capable of predicting tolerance before undergoing drug weaning.

Hypothesis

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Experimental Design

The complete database comprised the expression measurements of 54 675 genes for nine operationally tolerant (TOL) and eight immunosuppression-dependent (ID) samples.

Experimental Variables

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Controls

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Methods

MAS 5

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11881

Microarray
Affymetrix HG-U133_Plus_2
17 Samples Loaded: 17
Human (Homo sapiens)
PBMC
Liver Transplantation
Ficoll PBMC isolation from peripheral blood
NA
Tryzol extraction
Sample Set Spreadsheet
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Samples Preview
Sample ID Grouping Sample Title
GSM124575 Non Tolerant PBMC Nontolerant PBMCsNoTOLVHC1
GSM124646 Tolerant PBMC Tolerant PBMCTOLVHC2
GSM124648 Tolerant PBMC Tolerant PBMCTOLVHC7
GSM124675 Non Tolerant PBMC Nontolerant PBMCsNoTOLVHC9
GSM124748 Non Tolerant PBMC Nontolerant PBMCsNoTOLVHC10
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File
sampleset4000135_sampleannotations.csv
Sample Set Spreadsheet
sampleset4000135_sampleannotations.csv
Sample Set Spreadsheet
sampleset4000135_sampleannotations.csv
Sample Set Spreadsheet
Log2 Transformed
Raw Signal
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Sample ID Grouping Sample Title
GSM124575
Non Tolerant PBMC
Nontolerant PBMCsNoTOLVHC1
GSM124646
Tolerant PBMC
Tolerant PBMCTOLVHC2
GSM124648
Tolerant PBMC
Tolerant PBMCTOLVHC7
GSM124675
Non Tolerant PBMC
Nontolerant PBMCsNoTOLVHC9
GSM124748
Non Tolerant PBMC
Nontolerant PBMCsNoTOLVHC10
GSM124753
Tolerant PBMC
Tolerant PBMCTOL14
GSM124833
Non Tolerant PBMC
Nontolerant PBMCsNoTOL16
GSM124834
Tolerant PBMC
Tolerant PBMCTOL17
GSM124836
Tolerant PBMC
Tolerant PBMCTOL18
GSM124838
Non Tolerant PBMC
Nontolerant PBMCsNoTOLVHC19
GSM124840
Non Tolerant PBMC
Nontolerant PBMCsNoTOLVHC20
GSM124842
Non Tolerant PBMC
Nontolerant PBMCsNoTOLVHC21
GSM124845
Tolerant PBMC
Tolerant PBMCTOL25
GSM124850
Tolerant PBMC
Tolerant PBMCTOLVHC26
GSM124851
Tolerant PBMC
Tolerant PBMCTOL27
GSM124853
Tolerant PBMC
Tolerant PBMCTOL28
GSM124863
Non Tolerant PBMC
Nontolerant PBMCsNoTOL15

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