Role of HCV-induced immune responses on the establishment of operational tolerance following liver transplantation in humans-GSE52420
Immune responses induced by ongoing and/or past infections prevent the establishment of transplantation tolerance in experimental animal models. How host-pathogen interactions influence allograft tolerance in humans has not been investigated before. The spontaneous development of operational tolerance in liver transplant recipients with chronic hepatitis C virus (HCV) infection constitutes a unique setting to address this question. We conducted a clinical trial of immunosuppression withdrawal in stable HCV-infected liver recipients to elucidate: i) the mechanisms through which allograft tolerance is established in the presence of an ongoing inflammatory response; and ii) how is influenced by anti-HCV heterologous immune responses. Enrolled patients gradually discontinued their immunosuppressive drugs over 6-9 months, and those who maintained normal allograft status 12 months after drug withdrawal were considered operationally tolerant. Successful drug withdrawal was associated with intra-hepatic over-expression of type I interferon and immune-regulatory genes, and correlated with an expansion of exhausted PD1/CTLA4/2B4-positive HCV-specific circulating CD8+ T cells. These findings were already present before immunosuppression was discontinued and were specific for HCV infection. In contrast, the magnitude of HCV-induced inflammatory gene expression and the scope of anti-HCV effector T cell responses did not influence drug withdrawal outcome. Our data indicate that in humans persistent viral infections do not necessarily preclude the development of transplantation tolerance. At least in HCV-infected liver allografts, mechanisms associated with the capacity of the virus to evade adaptive immunity could contribute to the restraining of alloimmune responses and the establishment of transplantation tolerance.
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Transcriptomic study from the following liver tissue samples: 12 tolerant before immunosuppression (IS), 13 non-tolerant before IS, 4 from non-tolerant at the time of rejection, 13 from tolerant patients 12 months after IS discontinuation. Additionally, 8 liver tissue samples obtained from healthy living liver donors undergoing partial hepatectomy were included as non-transplanted controls.
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The data were normalised using quantile normalisation with Bioconductor (v2.5) Lumi package. |
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52420
Sample ID | !Sample Title | tissue | Grouping | Biopsy timepoint | Operational tolerance |
---|---|---|---|---|---|
GSM1265806 | tolerant_before immunosupression_H1P | liver biopsy | tolerant_before immunosuppression | before immunosuppression | tolerant |
GSM1265807 | tolerant_after immunosupression_H1I | liver biopsy | tolerant_after immunosuppression | after immunosuppression | tolerant |
GSM1265808 | tolerant_after immunosupression_H1PST | liver biopsy | tolerant_after immunosuppression | after immunosuppression | tolerant |
GSM1265809 | tolerant_before immunosuppression_H8P | liver biopsy | tolerant_before immunosuppression | before immunosuppression | tolerant |
GSM1265810 | tolerant_before immunosuppression_H9P | liver biopsy | tolerant_before immunosuppression | before immunosuppression | tolerant |
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Sample ID | !Sample Title | Tissue | Grouping | Biopsy timepoint | Operational tolerance | Patient status |
---|---|---|---|---|---|---|
GSM1265806 | tolerant_before immunosupression_H1P |
liver biopsy |
tolerant_before immunosuppression |
before immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265807 | tolerant_after immunosupression_H1I |
liver biopsy |
tolerant_after immunosuppression |
after immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265808 | tolerant_after immunosupression_H1PST |
liver biopsy |
tolerant_after immunosuppression |
after immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265809 | tolerant_before immunosuppression_H8P |
liver biopsy |
tolerant_before immunosuppression |
before immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265810 | tolerant_before immunosuppression_H9P |
liver biopsy |
tolerant_before immunosuppression |
before immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265811 | tolerant_after immunosuppression_H9PST |
liver biopsy |
tolerant_after immunosuppression |
after immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265812 | tolerant_before immunosuppression_H11P |
liver biopsy |
tolerant_before immunosuppression |
before immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265813 | tolerant_after immunosuppression_H11PST |
liver biopsy |
tolerant_after immunosuppression |
after immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265814 | tolerant_before immunosuppression_H17P |
liver biopsy |
tolerant_before immunosuppression |
before immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265815 | tolerant_after immunosuppression_H17PST |
liver biopsy |
tolerant_after immunosuppression |
after immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265816 | tolerant_after immunosuppression_H24PST |
liver biopsy |
tolerant_after immunosuppression |
after immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265817 | tolerant_before immunosuppression_H33P |
liver biopsy |
tolerant_before immunosuppression |
before immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265818 | tolerant_after immunosuppression_H33PST |
liver biopsy |
tolerant_after immunosuppression |
after immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265819 | tolerant_after immunosuppression_H40PST |
liver biopsy |
tolerant_after immunosuppression |
after immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265820 | tolerant_after immunosuppression_H58PST |
liver biopsy |
tolerant_after immunosuppression |
after immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265821 | tolerant_before immunosuppression_W43P |
liver biopsy |
tolerant_before immunosuppression |
before immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265822 | tolerant_before immunosuppression_W44P |
liver biopsy |
tolerant_before immunosuppression |
before immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265823 | tolerant_after immunosuppression_W44PST |
liver biopsy |
tolerant_after immunosuppression |
after immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265824 | tolerant_before immunosuppression_W58P |
liver biopsy |
tolerant_before immunosuppression |
before immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265825 | tolerant_after immunosuppression_W58PST |
liver biopsy |
tolerant_after immunosuppression |
after immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265826 | tolerant_before immunosuppression_W61P |
liver biopsy |
tolerant_before immunosuppression |
before immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265827 | tolerant_after immunosuppression_W61PST |
liver biopsy |
tolerant_after immunosuppression |
after immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265828 | non-tolerant_before immunosuppression_H2P |
liver biopsy |
non-tolerant_before immunosuppression |
before immunosuppression |
non-tolerant |
stable HCV-infected liver recipients |
GSM1265829 | non-tolerant_after immunosuppression_H2PST |
liver biopsy |
non-tolerant_after immunosuppression |
after immunosuppression |
non-tolerant |
no stable HCV-infected liver recipients |
GSM1265830 | non-tolerant_before immunosuppression_H3P |
liver biopsy |
non-tolerant_before immunosuppression |
before immunosuppression |
non-tolerant |
stable HCV-infected liver recipients |
GSM1265831 | non-tolerant_before immunosuppression_H12P |
liver biopsy |
non-tolerant_before immunosuppression |
before immunosuppression |
non-tolerant |
stable HCV-infected liver recipients |
GSM1265832 | non-tolerant_before immunosuppression_H29P |
liver biopsy |
non-tolerant_before immunosuppression |
before immunosuppression |
non-tolerant |
stable HCV-infected liver recipients |
GSM1265833 | non-tolerant_before immunosuppression_H37P |
liver biopsy |
non-tolerant_before immunosuppression |
before immunosuppression |
non-tolerant |
stable HCV-infected liver recipients |
GSM1265834 | non-tolerant_before immunosuppression_H38P |
liver biopsy |
non-tolerant_before immunosuppression |
before immunosuppression |
non-tolerant |
stable HCV-infected liver recipients |
GSM1265835 | non-tolerant_before immunosuppression_H39P |
liver biopsy |
non-tolerant_before immunosuppression |
before immunosuppression |
non-tolerant |
stable HCV-infected liver recipients |
GSM1265836 | non-tolerant_after immunosuppression_H39PST |
liver biopsy |
non-tolerant_after immunosuppression |
after immunosuppression |
non-tolerant |
no stable HCV-infected liver recipients |
GSM1265837 | non-tolerant_after immunosuppression_H52PST |
liver biopsy |
non-tolerant_after immunosuppression |
after immunosuppression |
non-tolerant |
no stable HCV-infected liver recipients |
GSM1265838 | non-tolerant_before immunosuppression_W6P |
liver biopsy |
non-tolerant_before immunosuppression |
before immunosuppression |
non-tolerant |
stable HCV-infected liver recipients |
GSM1265839 | non-tolerant_before immunosuppression_W52P |
liver biopsy |
non-tolerant_before immunosuppression |
before immunosuppression |
non-tolerant |
stable HCV-infected liver recipients |
GSM1265840 | non-tolerant_before immunosuppression_W55P |
liver biopsy |
non-tolerant_before immunosuppression |
before immunosuppression |
non-tolerant |
stable HCV-infected liver recipients |
GSM1265841 | non-tolerant_before immunosuppression_W60P |
liver biopsy |
non-tolerant_before immunosuppression |
before immunosuppression |
non-tolerant |
stable HCV-infected liver recipients |
GSM1265842 | non-tolerant_before immunosuppression_W82P |
liver biopsy |
non-tolerant_before immunosuppression |
before immunosuppression |
non-tolerant |
stable HCV-infected liver recipients |
GSM1265843 | non-tolerant_after immunosuppression_W82PST |
liver biopsy |
non-tolerant_after immunosuppression |
after immunosuppression |
non-tolerant |
no stable HCV-infected liver recipients |
GSM1265844 | non-tolerant_before immunosuppression_W103P |
liver biopsy |
non-tolerant_before immunosuppression |
before immunosuppression |
non-tolerant |
stable HCV-infected liver recipients |
GSM1265845 | tolerant_before immunosuppression_H51P |
liver biopsy |
tolerant_before immunosuppression |
before immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265846 | tolerant_before immunosuppression_H56P |
liver biopsy |
tolerant_before immunosuppression |
before immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265847 | tolerant_after immunosuppression_H56PST |
liver biopsy |
tolerant_after immunosuppression |
after immunosuppression |
tolerant |
stable HCV-infected liver recipients |
GSM1265848 | healthy living liver donor_LD1 |
liver biopsy |
Healthy Controls |
non-transplanted controls |
||
GSM1265849 | healthy living liver donor_LD2 |
liver biopsy |
Healthy Controls |
non-transplanted controls |
||
GSM1265850 | healthy living liver donor_LD3 |
liver biopsy |
Healthy Controls |
non-transplanted controls |
||
GSM1265851 | healthy living liver donor_LD4 |
liver biopsy |
Healthy Controls |
non-transplanted controls |
||
GSM1265852 | healthy living liver donor_LD5 |
liver biopsy |
Healthy Controls |
non-transplanted controls |
||
GSM1265853 | healthy living liver donor_LD6 |
liver biopsy |
Healthy Controls |
non-transplanted controls |
||
GSM1265854 | healthy living liver donor_LD7 |
liver biopsy |
Healthy Controls |
non-transplanted controls |
||
GSM1265855 | healthy living liver donor_LD8 |
liver biopsy |
Healthy Controls |
non-transplanted controls |
Name | ||
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