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Clinical

Role of HCV-induced immune responses on the establishment of operational tolerance following liver transplantation in humans-GSE52420

Purpose

Immune responses induced by ongoing and/or past infections prevent the establishment of transplantation tolerance in experimental animal models. How host-pathogen interactions influence allograft tolerance in humans has not been investigated before. The spontaneous development of operational tolerance in liver transplant recipients with chronic hepatitis C virus (HCV) infection constitutes a unique setting to address this question. We conducted a clinical trial of immunosuppression withdrawal in stable HCV-infected liver recipients to elucidate: i) the mechanisms through which allograft tolerance is established in the presence of an ongoing inflammatory response; and ii) how is influenced by anti-HCV heterologous immune responses. Enrolled patients gradually discontinued their immunosuppressive drugs over 6-9 months, and those who maintained normal allograft status 12 months after drug withdrawal were considered operationally tolerant. Successful drug withdrawal was associated with intra-hepatic over-expression of type I interferon and immune-regulatory genes, and correlated with an expansion of exhausted PD1/CTLA4/2B4-positive HCV-specific circulating CD8+ T cells. These findings were already present before immunosuppression was discontinued and were specific for HCV infection. In contrast, the magnitude of HCV-induced inflammatory gene expression and the scope of anti-HCV effector T cell responses did not influence drug withdrawal outcome. Our data indicate that in humans persistent viral infections do not necessarily preclude the development of transplantation tolerance. At least in HCV-infected liver allografts, mechanisms associated with the capacity of the virus to evade adaptive immunity could contribute to the restraining of alloimmune responses and the establishment of transplantation tolerance.

Hypothesis

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Experimental Design

Transcriptomic study from the following liver tissue samples: 12 tolerant before immunosuppression (IS), 13 non-tolerant before IS, 4 from non-tolerant at the time of rejection, 13 from tolerant patients 12 months after IS discontinuation. Additionally, 8 liver tissue samples obtained from healthy living liver donors undergoing partial hepatectomy were included as non-transplanted controls.

Experimental Variables

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Controls

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Methods
The data were normalised using quantile normalisation with Bioconductor (v2.5) Lumi package.
Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE52420

Microarray
Illumina HumanHT-12 v4
50 Samples Loaded: 50
Human (Homo sapiens)
Liver Biopsy
Liver Transplant
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample Title tissue Grouping Biopsy timepoint Operational tolerance
GSM1265806 tolerant_before immunosupression_H1P liver biopsy tolerant_before immunosuppression before immunosuppression tolerant
GSM1265807 tolerant_after immunosupression_H1I liver biopsy tolerant_after immunosuppression after immunosuppression tolerant
GSM1265808 tolerant_after immunosupression_H1PST liver biopsy tolerant_after immunosuppression after immunosuppression tolerant
GSM1265809 tolerant_before immunosuppression_H8P liver biopsy tolerant_before immunosuppression before immunosuppression tolerant
GSM1265810 tolerant_before immunosuppression_H9P liver biopsy tolerant_before immunosuppression before immunosuppression tolerant
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sampleset4000137_sampleannotations.csv
Sample Set Spreadsheet
sampleset4000137_sampleannotations.csv
Sample Set Spreadsheet
Log2 Transformed
Raw Signal
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Sample ID !Sample Title Tissue Grouping Biopsy timepoint Operational tolerance Patient status
GSM1265806
tolerant_before immunosupression_H1P
liver biopsy
tolerant_before immunosuppression
before immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265807
tolerant_after immunosupression_H1I
liver biopsy
tolerant_after immunosuppression
after immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265808
tolerant_after immunosupression_H1PST
liver biopsy
tolerant_after immunosuppression
after immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265809
tolerant_before immunosuppression_H8P
liver biopsy
tolerant_before immunosuppression
before immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265810
tolerant_before immunosuppression_H9P
liver biopsy
tolerant_before immunosuppression
before immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265811
tolerant_after immunosuppression_H9PST
liver biopsy
tolerant_after immunosuppression
after immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265812
tolerant_before immunosuppression_H11P
liver biopsy
tolerant_before immunosuppression
before immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265813
tolerant_after immunosuppression_H11PST
liver biopsy
tolerant_after immunosuppression
after immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265814
tolerant_before immunosuppression_H17P
liver biopsy
tolerant_before immunosuppression
before immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265815
tolerant_after immunosuppression_H17PST
liver biopsy
tolerant_after immunosuppression
after immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265816
tolerant_after immunosuppression_H24PST
liver biopsy
tolerant_after immunosuppression
after immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265817
tolerant_before immunosuppression_H33P
liver biopsy
tolerant_before immunosuppression
before immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265818
tolerant_after immunosuppression_H33PST
liver biopsy
tolerant_after immunosuppression
after immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265819
tolerant_after immunosuppression_H40PST
liver biopsy
tolerant_after immunosuppression
after immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265820
tolerant_after immunosuppression_H58PST
liver biopsy
tolerant_after immunosuppression
after immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265821
tolerant_before immunosuppression_W43P
liver biopsy
tolerant_before immunosuppression
before immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265822
tolerant_before immunosuppression_W44P
liver biopsy
tolerant_before immunosuppression
before immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265823
tolerant_after immunosuppression_W44PST
liver biopsy
tolerant_after immunosuppression
after immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265824
tolerant_before immunosuppression_W58P
liver biopsy
tolerant_before immunosuppression
before immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265825
tolerant_after immunosuppression_W58PST
liver biopsy
tolerant_after immunosuppression
after immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265826
tolerant_before immunosuppression_W61P
liver biopsy
tolerant_before immunosuppression
before immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265827
tolerant_after immunosuppression_W61PST
liver biopsy
tolerant_after immunosuppression
after immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265828
non-tolerant_before immunosuppression_H2P
liver biopsy
non-tolerant_before immunosuppression
before immunosuppression
non-tolerant
stable HCV-infected liver recipients
GSM1265829
non-tolerant_after immunosuppression_H2PST
liver biopsy
non-tolerant_after immunosuppression
after immunosuppression
non-tolerant
no stable HCV-infected liver recipients
GSM1265830
non-tolerant_before immunosuppression_H3P
liver biopsy
non-tolerant_before immunosuppression
before immunosuppression
non-tolerant
stable HCV-infected liver recipients
GSM1265831
non-tolerant_before immunosuppression_H12P
liver biopsy
non-tolerant_before immunosuppression
before immunosuppression
non-tolerant
stable HCV-infected liver recipients
GSM1265832
non-tolerant_before immunosuppression_H29P
liver biopsy
non-tolerant_before immunosuppression
before immunosuppression
non-tolerant
stable HCV-infected liver recipients
GSM1265833
non-tolerant_before immunosuppression_H37P
liver biopsy
non-tolerant_before immunosuppression
before immunosuppression
non-tolerant
stable HCV-infected liver recipients
GSM1265834
non-tolerant_before immunosuppression_H38P
liver biopsy
non-tolerant_before immunosuppression
before immunosuppression
non-tolerant
stable HCV-infected liver recipients
GSM1265835
non-tolerant_before immunosuppression_H39P
liver biopsy
non-tolerant_before immunosuppression
before immunosuppression
non-tolerant
stable HCV-infected liver recipients
GSM1265836
non-tolerant_after immunosuppression_H39PST
liver biopsy
non-tolerant_after immunosuppression
after immunosuppression
non-tolerant
no stable HCV-infected liver recipients
GSM1265837
non-tolerant_after immunosuppression_H52PST
liver biopsy
non-tolerant_after immunosuppression
after immunosuppression
non-tolerant
no stable HCV-infected liver recipients
GSM1265838
non-tolerant_before immunosuppression_W6P
liver biopsy
non-tolerant_before immunosuppression
before immunosuppression
non-tolerant
stable HCV-infected liver recipients
GSM1265839
non-tolerant_before immunosuppression_W52P
liver biopsy
non-tolerant_before immunosuppression
before immunosuppression
non-tolerant
stable HCV-infected liver recipients
GSM1265840
non-tolerant_before immunosuppression_W55P
liver biopsy
non-tolerant_before immunosuppression
before immunosuppression
non-tolerant
stable HCV-infected liver recipients
GSM1265841
non-tolerant_before immunosuppression_W60P
liver biopsy
non-tolerant_before immunosuppression
before immunosuppression
non-tolerant
stable HCV-infected liver recipients
GSM1265842
non-tolerant_before immunosuppression_W82P
liver biopsy
non-tolerant_before immunosuppression
before immunosuppression
non-tolerant
stable HCV-infected liver recipients
GSM1265843
non-tolerant_after immunosuppression_W82PST
liver biopsy
non-tolerant_after immunosuppression
after immunosuppression
non-tolerant
no stable HCV-infected liver recipients
GSM1265844
non-tolerant_before immunosuppression_W103P
liver biopsy
non-tolerant_before immunosuppression
before immunosuppression
non-tolerant
stable HCV-infected liver recipients
GSM1265845
tolerant_before immunosuppression_H51P
liver biopsy
tolerant_before immunosuppression
before immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265846
tolerant_before immunosuppression_H56P
liver biopsy
tolerant_before immunosuppression
before immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265847
tolerant_after immunosuppression_H56PST
liver biopsy
tolerant_after immunosuppression
after immunosuppression
tolerant
stable HCV-infected liver recipients
GSM1265848
healthy living liver donor_LD1
liver biopsy
Healthy Controls
 
 
non-transplanted controls
GSM1265849
healthy living liver donor_LD2
liver biopsy
Healthy Controls
 
 
non-transplanted controls
GSM1265850
healthy living liver donor_LD3
liver biopsy
Healthy Controls
 
 
non-transplanted controls
GSM1265851
healthy living liver donor_LD4
liver biopsy
Healthy Controls
 
 
non-transplanted controls
GSM1265852
healthy living liver donor_LD5
liver biopsy
Healthy Controls
 
 
non-transplanted controls
GSM1265853
healthy living liver donor_LD6
liver biopsy
Healthy Controls
 
 
non-transplanted controls
GSM1265854
healthy living liver donor_LD7
liver biopsy
Healthy Controls
 
 
non-transplanted controls
GSM1265855
healthy living liver donor_LD8
liver biopsy
Healthy Controls
 
 
non-transplanted controls

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