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Clinical
Withdrawal of immunosuppressive therapy in stable liver transplant recipients - GSE28842
Purpose

Complications due to long-term administration of immunosuppressive therapy increase the morbidity and mortality of liver transplant recipients. Discontinuation of immunosuppressive drugs in recipients spontaneously developing operational tolerance could substantially lessen this burden. However, this strategy results in the development of rejection in a high proportion of recipients who require lifelong immunosuppression. Thus, there is a need to identify predictive factors of successful drug withdrawal and to define the clinical and histological outcomes of operationally tolerant liver recipients. Methods. We enrolled 102 stable liver transplant recipients in an immunosuppression withdrawal trial in which drugs were gradually discontinued over a 6-9 month period. Patients with stable graft function and no signs of rejection in a liver biopsy conducted 12 months after cessation of immunosuppressive therapy were considered operationally tolerant. Results. Out of the 98 recipients who completed the study, immunosuppression discontinuation was successful in 41 recipients and rejection occurred in 57. Rejection episodes were mild and were resolved in all cases. Development of tolerance was independently associated with time elapsed since transplantation, recipient age, and male gender. No histological damage was apparent in protocol biopsies performed after successful drug withdrawal.

Hypothesis

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Experimental Design

PBMC gene expression profiling was assessed by DNA microarray in liver trasplanted patients groups: A group of inmunetolerant patients (TOL ;n=20), a group of non inmunotolerant (NonTOL; n=25). Finally from these two groups (Tolerant pTOL=12 and Non Tolerant pNonTOL=14 ) a sample is obtained a year after weaning

Experimental Variables

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Controls

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Methods

'frma' function of the Bioconductor package (v2.6) 'frma' in R.2.11.1

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi

Microarray
Affymetrix HG-U133_Plus_2
71 Samples Loaded: 71
Human (Homo sapiens)
PBMC
Liver Transplant
Sample Set Spreadsheet
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Samples Preview
Sample ID Age !Sample_title cell type gender [0=male;1=female] months from transplant
GSM714219 59 PBMC from TOL group (W1_TOL) PBMC 0 195
GSM714220 63 PBMC from TOL group (W4_TOL) PBMC 0 90
GSM714221 73 PBMC from TOL group (W5_TOL) PBMC 1 122
GSM714222 27 PBMC from TOL group (W8_TOL) PBMC 0 92
GSM714223 57 PBMC from TOL group (W9_TOL) PBMC 0 212
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Log2 Transformed
Raw Signal
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Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID Age !Sample Title Cell type Gender [0=male;1=female] Months from transplant Tolerance group
GSM714219
59
PBMC from TOL group (W1_TOL)
PBMC
0
195
TOL
GSM714220
63
PBMC from TOL group (W4_TOL)
PBMC
0
90
TOL
GSM714221
73
PBMC from TOL group (W5_TOL)
PBMC
1
122
TOL
GSM714222
27
PBMC from TOL group (W8_TOL)
PBMC
0
92
TOL
GSM714223
57
PBMC from TOL group (W9_TOL)
PBMC
0
212
TOL
GSM714224
69
PBMC from TOL group (W10_TOL)
PBMC
1
202
TOL
GSM714225
69
PBMC from TOL group (W14_TOL)
PBMC
0
143
TOL
GSM714226
67
PBMC from TOL group (W18_TOL)
PBMC
1
54
TOL
GSM714227
34
PBMC from TOL group (W20_TOL)
PBMC
0
143
TOL
GSM714228
71
PBMC from TOL group (W39_TOL)
PBMC
0
52
TOL
GSM714229
49
PBMC from TOL group (W63_TOL)
PBMC
0
92
TOL
GSM714230
50
PBMC from TOL group (W64_TOL)
PBMC
0
109
TOL
GSM714231
50
PBMC from pTOL group (W64_pTOL)
PBMC
0
128
pTOL
GSM714232
70
PBMC from TOL group (W87_TOL)
PBMC
0
114
TOL
GSM714233
60
PBMC from TOL group (W111_TOL)
PBMC
0
155
TOL
GSM714234
65
PBMC from TOL group (W113_TOL)
PBMC
0
94
TOL
GSM714235
59
PBMC from TOL group (W120_TOL)
PBMC
1
187
TOL
GSM714236
54
PBMC from TOL group (W127_TOL)
PBMC
0
134
TOL
GSM714237
68
PBMC from TOL group (W129_TOL)
PBMC
0
109
TOL
GSM714238
49
PBMC from TOL group (W79_TOL)
PBMC
0
82
TOL
GSM714239
64
PBMC from TOL group (W37_TOL)
PBMC
0
258
TOL
GSM714240
67
PBMC from NonTOL group (W6_NonTOL)
PBMC
0
117
NonTOL
GSM714241
47
PBMC from NonTOL group (W11_NonTOL)
PBMC
1
150
NonTOL
GSM714242
51
PBMC from NonTOL group (W15_NonTOL)
PBMC
0
192
NonTOL
GSM714243
37
PBMC from NonTOL group (W17_NonTOL)
PBMC
0
56
NonTOL
GSM714244
56
PBMC from NonTOL group (W19_NonTOL)
PBMC
0
37
NonTOL
GSM714245
70
PBMC from NonTOL group (W21_NonTOL)
PBMC
0
134
NonTOL
GSM714246
71
PBMC from NonTOL group (W22_NonTOL)
PBMC
1
103
NonTOL
GSM714247
58
PBMC from NonTOL group (W38_NonTOL)
PBMC
0
76
NonTOL
GSM714248
48
PBMC from NonTOL group (W40_NonTOL)
PBMC
0
34
NonTOL
GSM714249
30
PBMC from NonTOL group (W41_NonTOL)
PBMC
0
42
NonTOL
GSM714250
50
PBMC from NonTOL group (W65_NonTOL)
PBMC
1
119
NonTOL
GSM714251
40
PBMC from NonTOL group (W66_NonTOL)
PBMC
0
39
NonTOL
GSM714252
41
PBMC from NonTOL group (W72_NonTOL)
PBMC
1
80
NonTOL
GSM714253
45
PBMC from NonTOL group (W73_NonTOL)
PBMC
1
46
NonTOL
GSM714254
56
PBMC from NonTOL group (W75_NonTOL)
PBMC
0
43
NonTOL
GSM714255
25
PBMC from NonTOL group (W78_NonTOL)
PBMC
1
39
NonTOL
GSM714256
60
PBMC from NonTOL group (W81_NonTOL)
PBMC
0
102
NonTOL
GSM714257
65
PBMC from NonTOL group (W82_NonTOL)
PBMC
0
126
NonTOL
GSM714258
61
PBMC from NonTOL group (W85_NonTOL)
PBMC
1
110
NonTOL
GSM714259
40
PBMC from NonTOL group (W88_NonTOL)
PBMC
1
29
NonTOL
GSM714260
67
PBMC from NonTOL group (W89_NonTOL)
PBMC
0
39
NonTOL
GSM714261
50
PBMC from NonTOL group (W108_NonTOL)
PBMC
0
141
NonTOL
GSM714262
60
PBMC from NonTOL group (W112_NonTOL)
PBMC
0
91
NonTOL
GSM714263
57
PBMC from NonTOL group (W115_NonTOL)
PBMC
0
105
NonTOL
GSM714264
54
PBMC from NonTOL group (W116_NonTOL)
PBMC
1
88
NonTOL
GSM714265
47
PBMC from pNonTOL group (W11_pNonTOL)
PBMC
1
174
pNonTOL
GSM714266
37
PBMC from pNonTOL group (W17_pNonTOL)
PBMC
0
80.4
pNonTOL
GSM714267
67
PBMC from pNonTOL group (W6_pNonTOL)
PBMC
0
145.7
pNonTOL
GSM714268
51
PBMC from pNonTOL group (W15_pNonTOL)
PBMC
0
219.57
pNonTOL
GSM714269
58
PBMC from pNonTOL group (W38_pNonTOL)
PBMC
0
98.3
pNonTOL
GSM714270
56
PBMC from pNonTOL group (W19_pNonTOL)
PBMC
0
62.3
pNonTOL
GSM714271
45
PBMC from pNonTOL group (W73_pNonTOL)
PBMC
1
61.73
pNonTOL
GSM714272
25
PBMC from pNonTOL group (W78_pNonTOL)
PBMC
1
55.6
pNonTOL
GSM714273
34
PBMC from pTOL group (W20_pTOL)
PBMC
0
168.03
pTOL
GSM714274
67
PBMC from pNonTOL group (W89_pNonTOL)
PBMC
0
57.83
pNonTOL
GSM714275
54
PBMC from pNonTOL group (W116_pNonTOL)
PBMC
1
102.6
pNonTOL
GSM714276
61
PBMC from pNonTOL group (W85_pNonTOL)
PBMC
1
130.37
pNonTOL
GSM714277
40
PBMC from pNonTOL group (W66_pNonTOL)
PBMC
0
62.73
pNonTOL
GSM714278
30
PBMC from pNonTOL group (W41_pNonTOL)
PBMC
0
66.37
pNonTOL
GSM714279
48
PBMC from pNonTOL group (W40_pNonTOL)
PBMC
0
58.17
pNonTOL
GSM714280
59
PBMC from pTOL group (W1_pTOL)
PBMC
0
217.8
pTOL
GSM714281
73
PBMC from pTOL group (W5_pTOL)
PBMC
1
151.37
pTOL
GSM714282
27
PBMC from pTOL group (W8_pTOL)
PBMC
0
120.33
pTOL
GSM714283
69
PBMC from pTOL group (W10_pTOL)
PBMC
1
225.93
pTOL
GSM714284
63
PBMC from pTOL group (W4_pTOL)
PBMC
0
119.73
pTOL
GSM714285
69
PBMC from pTOL group (W14_pTOL)
PBMC
0
160.23
pTOL
GSM714286
71
PBMC from pTOL group (W39_pTOL)
PBMC
0
73.33
pTOL
GSM714287
57
PBMC from pTOL group (W9_pTOL)
PBMC
0
247.17
pTOL
GSM714288
70
PBMC from pTOL group (W87_pTOL)
PBMC
0
134.13
pTOL
GSM714289
49
PBMC from pTOL group (W63_pTOL)
PBMC
0
116.17
pTOL

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