Multiparameter Immune Profiling Operational Tolerance in Liver Transplantation-GSE11881
Immunosuppressive drugs can be completely withdrawn in up to 20% of liver transplant recipients, commonly referred to as ‘operationally’ tolerant. Immune characterization of these patients, however, has not been performed in detail, and we lack tests capable of identifying tolerant patients among recipients receiving maintenance immunosuppression. In the current study we have analyzed a variety of biological traits in peripheral blood of operationally tolerant liver recipients in an attempt to define a multiparameter ‘fingerprint’ of tolerance. Thus, we have performed peripheral blood gene expression profiling and extensive blood cell immunophenotyping on 16 operationally tolerant liver recipients, 16 recipients requiring on-going immunosuppressive therapy, and 10 healthy individuals. Microarray profiling identified a gene expression signature that could discriminate tolerant recipients from immunosuppression-dependent patients with high accuracy. This signature included genes encoding for ?d T-cell and NK receptors, and for proteins involved in cell proliferation arrest. In addition, tolerant recipients exhibited significantly greater numbers of circulating potentially regulatory T-cell subsets (CD4+CD25+ T-cells and Vd1+ T cells) than either non-tolerant patients or healthy individuals. Our data provide novel mechanistic insight on liver allograft operational tolerance, and constitute a first step in the search for a non-invasive diagnostic signature capable of predicting tolerance before undergoing drug weaning.
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The complete database comprised the expression measurements of 54 675 genes for nine operationally tolerant (TOL) and eight immunosuppression-dependent (ID) samples.
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MAS 5
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11881
Sample ID | !Sample_title | Grouping | Sample Title | Peripheral blood mononuclear cells obtained from a tolerant liver transplant recipient, hepatitis C virus negative | Peripheral blood mononuclear cells obtained from a tolerant liver transplant recipient (no immunosuppressive drugs) |
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GSM124575 | Non-tolerant PBMCs_NoTOL_VHC_1 | Non-tolerant PBMC | Non-tolerant PBMCs_NoTOL_VHC_1 | ||
GSM124646 | Tolerant PBMC_TOL_VHC_2 | Tolerant PBMC | Tolerant PBMC_TOL_VHC_2 | ||
GSM124648 | Tolerant PBMC_TOL_VHC_7 | Tolerant PBMC | Tolerant PBMC_TOL_VHC_7 | ||
GSM124675 | Non-tolerant PBMCs_NoTOL_VHC_9 | Non-tolerant PBMC | Non-tolerant PBMCs_NoTOL_VHC_9 | ||
GSM124748 | Non-tolerant PBMCs_NoTOL_VHC_10 | Non-tolerant PBMC | Non-tolerant PBMCs_NoTOL_VHC_10 |
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Sample ID | !Sample Title | Grouping | Sample Title | Peripheral blood mononuclear cells obtained from a tolerant liver transplant recipient, hepatitis C virus negative | Peripheral blood mononuclear cells obtained from a tolerant liver transplant recipient (no immunosuppressive drugs) | Peripheral blood mononuclear cells obtained from a tolerant liver transplant recipient, virus hepatitis C negative | Peripheral blood mononuclear cells from tolerant liver transplant recipient with hepatitis C virus infection | Peripheral blood mononuclear cells obtained from tolerant liver transplant recipient, virus hepatitis C negative | Peripheral blood mononuclear cells obtaiend from a tolerant liver transplant recipient, virus hepatitis C negative | Peripheral blood mononuclear cells obtained from a tolerant liver transplant recipient with hepatitis C virus infection | Peripheral blood obtained from non-tolerant liver transplant recipient with hepatitis C virus infection | Peripheral blood mononuclear cells obtained from a non-tolerant liver transplant recipient under tacrolimus treatment, no hepatitis C virus infection | Peripheral blood mononuclear cells from tolerant liver transplant recipient with hepatitis C virus infection | Peripheral blood mononuclear cells obtaiend from a tolerant liver transplant recipient, virus hepatitis C negative | Peripheral blood mononuclear cells obtained from a non-tolerant liver transplant recipient under tacrolimus treatment, no hepatitis C virus infection | Peripheral blood mononuclear cells obtained from a tolerant liver transplant recipient (no immunosuppressive drugs) | Peripheral blood mononuclear cells obtained from a tolerant liver transplant recipient with hepatitis C virus infection | Peripheral blood mononuclear cells obtained from a tolerant liver transplant recipient, hepatitis C virus negative | Peripheral blood mononuclear cells obtained from a tolerant liver transplant recipient, virus hepatitis C negative | Peripheral blood mononuclear cells obtained from tolerant liver transplant recipient, virus hepatitis C negative | Peripheral blood obtained from non-tolerant liver transplant recipient with hepatitis C virus infection |
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GSM124575 | Non-tolerant PBMCs_NoTOL_VHC_1 |
Non-tolerant PBMC |
Non-tolerant PBMCs_NoTOL_VHC_1 |
True |
TRUE |
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GSM124646 | Tolerant PBMC_TOL_VHC_2 |
Tolerant PBMC |
Tolerant PBMC_TOL_VHC_2 |
||||||||||||||||||
GSM124648 | Tolerant PBMC_TOL_VHC_7 |
Tolerant PBMC |
Tolerant PBMC_TOL_VHC_7 |
True |
TRUE |
||||||||||||||||
GSM124675 | Non-tolerant PBMCs_NoTOL_VHC_9 |
Non-tolerant PBMC |
Non-tolerant PBMCs_NoTOL_VHC_9 |
||||||||||||||||||
GSM124748 | Non-tolerant PBMCs_NoTOL_VHC_10 |
Non-tolerant PBMC |
Non-tolerant PBMCs_NoTOL_VHC_10 |
||||||||||||||||||
GSM124753 | Tolerant PBMC_TOL_14 |
Tolerant PBMC |
Tolerant PBMC_TOL_14 |
True |
TRUE |
||||||||||||||||
GSM124833 | Non-tolerant PBMCs_NoTOL_16 |
Non-tolerant PBMC |
Non-tolerant PBMCs_NoTOL_16 |
||||||||||||||||||
GSM124834 | Tolerant PBMC_TOL_17 |
Tolerant PBMC |
Tolerant PBMC_TOL_17 |
True |
TRUE |
||||||||||||||||
GSM124836 | Tolerant PBMC_TOL_18 |
Tolerant PBMC |
Tolerant PBMC_TOL_18 |
True |
TRUE |
||||||||||||||||
GSM124838 | Non-tolerant PBMCs_NoTOL_VHC_19 |
Non-tolerant PBMC |
Non-tolerant PBMCs_NoTOL_VHC_19 |
||||||||||||||||||
GSM124840 | Non-tolerant PBMCs_NoTOL_VHC_20 |
Non-tolerant PBMC |
Non-tolerant PBMCs_NoTOL_VHC_20 |
||||||||||||||||||
GSM124842 | Non-tolerant PBMCs_NoTOL_VHC_21 |
Non-tolerant PBMC |
Non-tolerant PBMCs_NoTOL_VHC_21 |
||||||||||||||||||
GSM124845 | Tolerant PBMC_TOL_25 |
Tolerant PBMC |
Tolerant PBMC_TOL_25 |
True |
TRUE |
||||||||||||||||
GSM124850 | Tolerant PBMC_TOL_VHC_26 |
Tolerant PBMC |
Tolerant PBMC_TOL_VHC_26 |
True |
TRUE |
||||||||||||||||
GSM124851 | Tolerant PBMC_TOL_27 |
Tolerant PBMC |
Tolerant PBMC_TOL_27 |
True |
TRUE |
||||||||||||||||
GSM124853 | Tolerant PBMC_TOL_28 |
Tolerant PBMC |
Tolerant PBMC_TOL_28 |
True |
TRUE |
||||||||||||||||
GSM124863 | Non-tolerant PBMCs_NoTOL_15 |
Non-tolerant PBMC |
Non-tolerant PBMCs_NoTOL_15 |
True |
TRUE |
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