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Clinical

Multiparameter Immune Profiling Operational Tolerance in Liver Transplantation-GSE11881

Purpose

Immunosuppressive drugs can be completely withdrawn in up to 20% of liver transplant recipients, commonly referred to as ‘operationally’ tolerant. Immune characterization of these patients, however, has not been performed in detail, and we lack tests capable of identifying tolerant patients among recipients receiving maintenance immunosuppression. In the current study we have analyzed a variety of biological traits in peripheral blood of operationally tolerant liver recipients in an attempt to define a multiparameter ‘fingerprint’ of tolerance. Thus, we have performed peripheral blood gene expression profiling and extensive blood cell immunophenotyping on 16 operationally tolerant liver recipients, 16 recipients requiring on-going immunosuppressive therapy, and 10 healthy individuals. Microarray profiling identified a gene expression signature that could discriminate tolerant recipients from immunosuppression-dependent patients with high accuracy. This signature included genes encoding for ?d T-cell and NK receptors, and for proteins involved in cell proliferation arrest. In addition, tolerant recipients exhibited significantly greater numbers of circulating potentially regulatory T-cell subsets (CD4+CD25+ T-cells and Vd1+ T cells) than either non-tolerant patients or healthy individuals. Our data provide novel mechanistic insight on liver allograft operational tolerance, and constitute a first step in the search for a non-invasive diagnostic signature capable of predicting tolerance before undergoing drug weaning.

Hypothesis

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Experimental Design

The complete database comprised the expression measurements of 54 675 genes for nine operationally tolerant (TOL) and eight immunosuppression-dependent (ID) samples.

Experimental Variables

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Controls

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Methods

MAS 5

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE11881

Microarray
Affymetrix HG-U133_Plus_2
17 Samples Loaded: 17
Human (Homo sapiens)
PBMC
Liver Transplantation
Ficoll PBMC isolation from peripheral blood
NA
Tryzol extraction
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample_title Grouping Sample Title Peripheral blood mononuclear cells obtained from a tolerant liver transplant recipient, hepatitis C virus negative Peripheral blood mononuclear cells obtained from a tolerant liver transplant recipient (no immunosuppressive drugs)
GSM124575 Non-tolerant PBMCs_NoTOL_VHC_1 Non-tolerant PBMC Non-tolerant PBMCs_NoTOL_VHC_1
GSM124646 Tolerant PBMC_TOL_VHC_2 Tolerant PBMC Tolerant PBMC_TOL_VHC_2
GSM124648 Tolerant PBMC_TOL_VHC_7 Tolerant PBMC Tolerant PBMC_TOL_VHC_7
GSM124675 Non-tolerant PBMCs_NoTOL_VHC_9 Non-tolerant PBMC Non-tolerant PBMCs_NoTOL_VHC_9
GSM124748 Non-tolerant PBMCs_NoTOL_VHC_10 Non-tolerant PBMC Non-tolerant PBMCs_NoTOL_VHC_10
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File
sampleset4000135_sampleannotations.csv
Sample Set Spreadsheet
Raw Signal
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Sample ID !Sample Title Grouping Sample Title Peripheral blood mononuclear cells obtained from a tolerant liver transplant recipient, hepatitis C virus negative Peripheral blood mononuclear cells obtained from a tolerant liver transplant recipient (no immunosuppressive drugs) Peripheral blood mononuclear cells obtained from a tolerant liver transplant recipient, virus hepatitis C negative Peripheral blood mononuclear cells from tolerant liver transplant recipient with hepatitis C virus infection Peripheral blood mononuclear cells obtained from tolerant liver transplant recipient, virus hepatitis C negative Peripheral blood mononuclear cells obtaiend from a tolerant liver transplant recipient, virus hepatitis C negative Peripheral blood mononuclear cells obtained from a tolerant liver transplant recipient with hepatitis C virus infection Peripheral blood obtained from non-tolerant liver transplant recipient with hepatitis C virus infection Peripheral blood mononuclear cells obtained from a non-tolerant liver transplant recipient under tacrolimus treatment, no hepatitis C virus infection Peripheral blood mononuclear cells from tolerant liver transplant recipient with hepatitis C virus infection Peripheral blood mononuclear cells obtaiend from a tolerant liver transplant recipient, virus hepatitis C negative Peripheral blood mononuclear cells obtained from a non-tolerant liver transplant recipient under tacrolimus treatment, no hepatitis C virus infection Peripheral blood mononuclear cells obtained from a tolerant liver transplant recipient (no immunosuppressive drugs) Peripheral blood mononuclear cells obtained from a tolerant liver transplant recipient with hepatitis C virus infection Peripheral blood mononuclear cells obtained from a tolerant liver transplant recipient, hepatitis C virus negative Peripheral blood mononuclear cells obtained from a tolerant liver transplant recipient, virus hepatitis C negative Peripheral blood mononuclear cells obtained from tolerant liver transplant recipient, virus hepatitis C negative Peripheral blood obtained from non-tolerant liver transplant recipient with hepatitis C virus infection
GSM124575
Non-tolerant PBMCs_NoTOL_VHC_1
Non-tolerant PBMC
Non-tolerant PBMCs_NoTOL_VHC_1
 
 
 
 
 
 
 
True
 
 
 
 
 
 
 
 
 
TRUE
GSM124646
Tolerant PBMC_TOL_VHC_2
Tolerant PBMC
Tolerant PBMC_TOL_VHC_2
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
GSM124648
Tolerant PBMC_TOL_VHC_7
Tolerant PBMC
Tolerant PBMC_TOL_VHC_7
 
 
 
True
 
 
 
 
 
TRUE
 
 
 
 
 
 
 
 
GSM124675
Non-tolerant PBMCs_NoTOL_VHC_9
Non-tolerant PBMC
Non-tolerant PBMCs_NoTOL_VHC_9
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
GSM124748
Non-tolerant PBMCs_NoTOL_VHC_10
Non-tolerant PBMC
Non-tolerant PBMCs_NoTOL_VHC_10
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
GSM124753
Tolerant PBMC_TOL_14
Tolerant PBMC
Tolerant PBMC_TOL_14
 
True
 
 
 
 
 
 
 
 
 
 
TRUE
 
 
 
 
 
GSM124833
Non-tolerant PBMCs_NoTOL_16
Non-tolerant PBMC
Non-tolerant PBMCs_NoTOL_16
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
GSM124834
Tolerant PBMC_TOL_17
Tolerant PBMC
Tolerant PBMC_TOL_17
 
 
True
 
 
 
 
 
 
 
 
 
 
 
 
TRUE
 
 
GSM124836
Tolerant PBMC_TOL_18
Tolerant PBMC
Tolerant PBMC_TOL_18
 
 
 
 
True
 
 
 
 
 
 
 
 
 
 
 
TRUE
 
GSM124838
Non-tolerant PBMCs_NoTOL_VHC_19
Non-tolerant PBMC
Non-tolerant PBMCs_NoTOL_VHC_19
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
GSM124840
Non-tolerant PBMCs_NoTOL_VHC_20
Non-tolerant PBMC
Non-tolerant PBMCs_NoTOL_VHC_20
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
GSM124842
Non-tolerant PBMCs_NoTOL_VHC_21
Non-tolerant PBMC
Non-tolerant PBMCs_NoTOL_VHC_21
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
GSM124845
Tolerant PBMC_TOL_25
Tolerant PBMC
Tolerant PBMC_TOL_25
 
 
 
 
True
 
 
 
 
 
 
 
 
 
 
 
TRUE
 
GSM124850
Tolerant PBMC_TOL_VHC_26
Tolerant PBMC
Tolerant PBMC_TOL_VHC_26
 
 
 
 
 
 
True
 
 
 
 
 
 
TRUE
 
 
 
 
GSM124851
Tolerant PBMC_TOL_27
Tolerant PBMC
Tolerant PBMC_TOL_27
 
 
 
 
 
True
 
 
 
 
TRUE
 
 
 
 
 
 
 
GSM124853
Tolerant PBMC_TOL_28
Tolerant PBMC
Tolerant PBMC_TOL_28
True
 
 
 
 
 
 
 
 
 
 
 
 
 
TRUE
 
 
 
GSM124863
Non-tolerant PBMCs_NoTOL_15
Non-tolerant PBMC
Non-tolerant PBMCs_NoTOL_15
 
 
 
 
 
 
 
 
True
 
 
TRUE
 
 
 
 
 
 

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