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Clinical
Unique early gene expression patterns in adult to adult living donor liver grafts compared to deceased donor grafts
Purpose

Because of inherent differences between deceased donor (DD) and living donor (LD) liver grafts, we hypothesize that the molecular signatures will be unique, correlating with specific biologic pathways and clinical patterns. Following reperfusion, 579 genes in DD grafts and 1324 genes in LDs were differentially expressed (p<0.005). Many up-regulated LD genes were related to regeneration, biosynthesis and cell cycle, and a large number of down-regulated genes were linked to hepatic metabolism and energy pathways correlating with post-transplant clinical laboratory findings. There was significant up-regulation of inflammatory/immune genes in both DD and LD, each with a distinct pattern. Gene expression patterns of select genes associated with inflammation and regeneration in LD and DD grafts correlated with protein expression.Unique patterns of early gene expression are seen in LD and DD liver grafts, correlating with protein expression and clinical results, demonstrating distinct inflammatory profiles and significant down-regulation of metabolic pathways in LD grafts.

Hypothesis

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Experimental Design

Microarray was performed on 63 biopsies from 13 Dead Donor "DD" and 8 Living Donor "LD" liver grafts done at serial time points: 1) No Manipulation (NM), 2) Cold Preservation (CP), and Post reperfusion (PR).

Experimental Variables

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Controls

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Methods

RMAExpress

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi

Microarray
Affymetrix HG-U133_Plus_2
63 Samples Loaded: 63
Human (Homo sapiens)
Liver Biopsy
Liver Transplant
Liver Biopsy Tissue was frozen in RNALater. RNA was extracted using Trizol and purified on RNeasy Columns
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample Title Biopsy Type Donor type HCV Status
GSM319257 LivPAPost PR LD Negative
GSM319258 LivVCUDon(RC) NM LD Positve
GSM319259 LivVCUPost(RC) PR LD Positve
GSM319260 LivVCUPre(RC) CP LD Positve
GSM319261 Liv19Pre CP DD Positve
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File
sampleset4000146_sampleannotations-m.csv
Raw Signal
Fold Change
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Clinical Datasource
Links

Samples Viewer / Editor

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Sample ID !Sample Title Biopsy Type Donor type HCV Status
GSM319257
LivPAPost
PR
LD
Negative
GSM319258
LivVCUDon(RC)
NM
LD
Positve
GSM319259
LivVCUPost(RC)
PR
LD
Positve
GSM319260
LivVCUPre(RC)
CP
LD
Positve
GSM319261
Liv19Pre
CP
DD
Positve
GSM319262
Liv20Don
NM
DD
Positve
GSM319263
Liv20Post
PR
DD
Positve
GSM319264
Liv21Pre
CP
DD
Positve
GSM319265
Liv23Don
NM
LD
Negative
GSM319266
Liv23Post
PR
LD
Negative
GSM319267
Liv24Don
NM
DD
Positve
GSM319268
Liv24Pre
CP
DD
Positve
GSM319269
Liv19 Don
NM
DD
Positve
GSM319270
Liv19Post
PR
DD
Positve
GSM319271
Liv20Pre
CP
DD
Positve
GSM319272
Liv21Don
NM
DD
Positve
GSM319273
Liv21Post
PR
DD
Positve
GSM319274
Liv23Pre
CP
LD
Negative
GSM319275
Liv24Post
PR
DD
Positve
GSM319276
Liv25Don
NM
DD
Positve
GSM319277
Liv26Pre
CP
DD
Negative
GSM319278
Liv29Post
PR
DD
Negative
GSM319279
Liv31Don
NM
DD
Positve
GSM319280
Liv32Pre
CP
DD
Positve
GSM319281
Liv33Post
PR
DD
Negative
GSM319282
Liv42Don
NM
LD
Negative
GSM319283
Liv46Pre
CP
DD
Negative
GSM319284
Liv26Don
NM
DD
Negative
GSM319285
Liv29Pre
CP
DD
Negative
GSM319286
Liv32Don
NM
DD
Positve
GSM319287
Liv47Post
PR
LD
Negative
GSM319288
Liv48Don
NM
LD
Negative
GSM319289
Liv49Pre
CP
DD
Positve
GSM319290
Liv50Post
PR
LD
Negative
GSM319291
Liv25Post
PR
DD
Positve
GSM319292
Liv33Pre
CP
DD
Negative
GSM319293
Liv42Post
PR
LD
Negative
GSM319294
Liv46Don
NM
DD
Negative
GSM319295
Liv47Pre
CP
LD
Negative
GSM319296
Liv48Post
PR
LD
Negative
GSM319297
Liv49Don
NM
DD
Positve
GSM319298
Liv50Pre
CP
LD
Negative
GSM319299
Liv29Don
NM
DD
Negative
GSM319300
Liv31Pre
CP
DD
Positve
GSM319301
Liv32Post
PR
DD
Positve
GSM319302
Liv33Don
NM
DD
Negative
GSM319303
Liv42Pre
CP
LD
Negative
GSM319304
Liv46Post
PR
DD
Negative
GSM319305
Liv47Don
NM
LD
Negative
GSM319306
Liv48Pre
CP
LD
Negative
GSM319307
Liv25Pre
CP
DD
Positve
GSM319308
Liv26Post
PR
DD
Negative
GSM319309
Liv31Post
PR
DD
Positve
GSM319310
Liv49Post
PR
DD
Positve
GSM319311
Liv50Don
NM
LD
Negative
GSM319312
Liv27Don
NM
DD
Negative
GSM319313
Liv27Pre
CP
DD
Negative
GSM319314
Liv30Post
PR
LD
Positve
GSM319315
LivPAPre
CP
LD
Negative
GSM319316
Liv27Post
PR
DD
Negative
GSM319317
Liv30Don
NM
LD
Positve
GSM319318
Liv30Pre
CP
LD
Positve
GSM319319
LivPADon
NM
LD
Negative

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