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Maternal influences on the transmission of leukocyte gene expression profiles in population samples (mother and child)-GSE21342

Purpose

This study contrasts the expression profiles of peripheral blood leukocytes from third trimester pregnant mothers, with cord blood leukocytes from their newborn children. It is a companion to (GSE21311). After normalization for RNA integrity, major principal components of the variation were found to distinguish individuals. Transmission of gene expression profiles from mother to child was documented, along with differences between gestational diabetic, obese, and normal weight mothers and their children.

Hypothesis

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Experimental Design

56 individulas (Brisbane, Australia) were sampled for the mother-newborn study, under informed consent. 19 mothers sample were collected in the last month of pregnancy (between 30th and 36th week of pregnancy) and 37 cord blood samples were obtained at birth from newborn babies. Mothers having BMI values over 30 before pregnancy were classified as obese. From the 37 newborn babies, 10 were born to obese mothers, 8 to gestational diabetic mothers (with a wide range of body mass indices), and 19 to normal-weight mothers. There were 16 mother-newborn pairs in the dataset. RNA from each was hybridized to an Illumina HT12 array.

Experimental Variables

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Controls

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Methods

Raw data was log2 transformed and median-centered using JMP Genomics 4.0 (SAS Institute, Cary NC).

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE21342

Microarray
Illumina HumanHT-12 v3
56 Samples Loaded: 56
Human (Homo sapiens)
Peripheral blood , Umbilical Cord Blood
Pregnancy
Total RNA was extracted from leukocyte samples using Ambion's Leukolocks kit. Quality control was performed using Agilent's Bioanalyzer.
Sample Set Spreadsheet
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Samples Preview
Sample ID !Sample_title tissue cell type rna integrity score life stage
GSM533312 Cord blood leukocyte_Child of gestational mother_Sample 1 umbilical cord blood leukocytes 8.4 newborn baby
GSM533313 Cord blood leukocyte_Child of gestational mother_Sample 2 umbilical cord blood leukocytes 7.6 newborn baby
GSM533314 Cord blood leukocyte_Child of gestational mother_Sample 3 umbilical cord blood leukocytes 6.9 newborn baby
GSM533315 Cord blood leukocyte_Child of gestational mother_Sample 4 umbilical cord blood leukocytes 3.8 newborn baby
GSM533316 Cord blood leukocyte_Child of gestational mother_Sample 5 umbilical cord blood leukocytes 4.3 newborn baby
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Raw Signal
Raw Signal
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Sample ID !Sample Title Tissue Cell type Rna integrity score Life stage
GSM533312
Cord blood leukocyte_Child of gestational mother_Sample 1
umbilical cord blood
leukocytes
8.4
newborn baby
GSM533313
Cord blood leukocyte_Child of gestational mother_Sample 2
umbilical cord blood
leukocytes
7.6
newborn baby
GSM533314
Cord blood leukocyte_Child of gestational mother_Sample 3
umbilical cord blood
leukocytes
6.9
newborn baby
GSM533315
Cord blood leukocyte_Child of gestational mother_Sample 4
umbilical cord blood
leukocytes
3.8
newborn baby
GSM533316
Cord blood leukocyte_Child of gestational mother_Sample 5
umbilical cord blood
leukocytes
4.3
newborn baby
GSM533317
Cord blood leukocyte_Child of gestational mother_Sample 6
umbilical cord blood
leukocytes
4.6
newborn baby
GSM533318
Cord blood leukocyte_Child of gestational mother_Sample 7
umbilical cord blood
leukocytes
5.4
newborn baby
GSM533319
Cord blood leukocyte_Child of gestational mother_Sample 8
umbilical cord blood
leukocytes
6.2
newborn baby
GSM533320
Cord blood leukocyte_Child of normal mother_Sample 1
umbilical cord blood
leukocytes
6.8
newborn baby
GSM533321
Cord blood leukocyte_Child of normal mother_Sample 2
umbilical cord blood
leukocytes
6.4
newborn baby
GSM533322
Cord blood leukocyte_Child of normal mother_Sample 3
umbilical cord blood
leukocytes
7.5
newborn baby
GSM533323
Cord blood leukocyte_Child of normal mother_Sample 4
umbilical cord blood
leukocytes
6.9
newborn baby
GSM533324
Cord blood leukocyte_Child of normal mother_Sample 5
umbilical cord blood
leukocytes
7.4
newborn baby
GSM533325
Cord blood leukocyte_Child of normal mother_Sample 6
umbilical cord blood
leukocytes
7.6
newborn baby
GSM533326
Cord blood leukocyte_Child of normal mother_Sample 7
umbilical cord blood
leukocytes
6.9
newborn baby
GSM533327
Cord blood leukocyte_Child of normal mother_Sample 8
umbilical cord blood
leukocytes
6.1
newborn baby
GSM533328
Cord blood leukocyte_Child of normal mother_Sample 9
umbilical cord blood
leukocytes
7.7
newborn baby
GSM533329
Cord blood leukocyte_Child of normal mother_Sample 10
umbilical cord blood
leukocytes
8.1
newborn baby
GSM533330
Cord blood leukocyte_Child of normal mother_Sample 11
umbilical cord blood
leukocytes
7.7
newborn baby
GSM533331
Cord blood leukocyte_Child of normal mother_Sample 12
umbilical cord blood
leukocytes
3.3
newborn baby
GSM533332
Cord blood leukocyte_Child of normal mother_Sample 13
umbilical cord blood
leukocytes
3.4
newborn baby
GSM533333
Cord blood leukocyte_Child of normal mother_Sample 14
umbilical cord blood
leukocytes
4.6
newborn baby
GSM533334
Cord blood leukocyte_Child of normal mother_Sample 15
umbilical cord blood
leukocytes
5.1
newborn baby
GSM533335
Cord blood leukocyte_Child of normal mother_Sample 16
umbilical cord blood
leukocytes
5.4
newborn baby
GSM533336
Cord blood leukocyte_Child of normal mother_Sample 17
umbilical cord blood
leukocytes
5.5
newborn baby
GSM533337
Cord blood leukocyte_Child of normal mother_Sample 18
umbilical cord blood
leukocytes
5.8
newborn baby
GSM533338
Cord blood leukocyte_Child of normal mother_Sample 19
umbilical cord blood
leukocytes
6.7
newborn baby
GSM533339
Cord blood leukocyte_Child of obese mother, Sample 3
umbilical cord blood
leukocytes
8.2
newborn baby
GSM533340
Cord blood leukocyte_Child of obese mother, Sample 4
umbilical cord blood
leukocytes
9.3
newborn baby
GSM533341
Cord blood leukocyte_Child of obese mother, Sample 5
umbilical cord blood
leukocytes
8.9
newborn baby
GSM533342
Cord blood leukocyte_Child of obese mother, Sample 6
umbilical cord blood
leukocytes
7.1
newborn baby
GSM533343
Cord blood leukocyte_Child of obese mother, Sample 8
umbilical cord blood
leukocytes
3.2
newborn baby
GSM533344
Cord blood leukocyte_Child of obese mother, Sample 9
umbilical cord blood
leukocytes
4.1
newborn baby
GSM533345
Cord blood leukocyte_Child of obese mother, Sample 10
umbilical cord blood
leukocytes
4.3
newborn baby
GSM533346
Cord blood leukocyte_Child of obese mother, Sample 11
umbilical cord blood
leukocytes
5.7
newborn baby
GSM533347
Cord blood leukocyte_Child of obese mother, Sample 12
umbilical cord blood
leukocytes
6
newborn baby
GSM533348
Cord blood leukocyte_Child of obese mother, Sample 13
umbilical cord blood
leukocytes
7.6
newborn baby
GSM533349
Peripheral blood leukocyte_Gestational diabetic mother_Sample 1
peripheral blood
leukocytes
5.8
mother
GSM533350
Peripheral blood leukocyte_Gestational diabetic mother_Sample 2
peripheral blood
leukocytes
6.1
mother
GSM533351
Peripheral blood leukocyte_Normal wieght mother_Sample 1
peripheral blood
leukocytes
8
mother
GSM533352
Peripheral blood leukocyte_Normal wieght mother_Sample 2
peripheral blood
leukocytes
8.4
mother
GSM533353
Peripheral blood leukocyte_Normal wieght mother_Sample 3
peripheral blood
leukocytes
7.4
mother
GSM533354
Peripheral blood leukocyte_Normal wieght mother_Sample 4
peripheral blood
leukocytes
6.2
mother
GSM533355
Peripheral blood leukocyte_Normal wieght mother_Sample 5
peripheral blood
leukocytes
7.9
mother
GSM533356
Peripheral blood leukocyte_Normal wieght mother_Sample 6
peripheral blood
leukocytes
8.7
mother
GSM533357
Peripheral blood leukocyte_Normal wieght mother_Sample 7
peripheral blood
leukocytes
6.3
mother
GSM533358
Peripheral blood leukocyte_Normal wieght mother_Sample 8
peripheral blood
leukocytes
4.7
mother
GSM533359
Peripheral blood leukocyte_Normal wieght mother_Sample 9
peripheral blood
leukocytes
5.2
mother
GSM533360
Peripheral blood leukocyte_Normal wieght mother_Sample 10
peripheral blood
leukocytes
5.4
mother
GSM533361
Peripheral blood leukocyte_Normal wieght mother_Sample 11
peripheral blood
leukocytes
7.5
mother
GSM533362
Peripheral blood leukocyte_Obese mother_Sample 1
peripheral blood
leukocytes
9
mother
GSM533363
Peripheral blood leukocyte_Obese mother_Sample 2
peripheral blood
leukocytes
7.6
mother
GSM533364
Peripheral blood leukocyte_Obese mother_Sample 3
peripheral blood
leukocytes
4.9
mother
GSM533365
Peripheral blood leukocyte_Obese mother_Sample 4
peripheral blood
leukocytes
7.7
mother
GSM533366
Peripheral blood leukocyte_Obese mother_Sample 5
peripheral blood
leukocytes
7.8
mother
GSM533367
Peripheral blood leukocyte_Obese mother_Sample 6
peripheral blood
leukocytes
8.5
mother

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