Sample Set Annotation Tool: CHANGES IN THE HUMAN TRANSCRIPTOME UPON VITAMIN D SUPPLEMENTATION-GSE94138

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Subjects of a randomized controlled trial (RCT) received either vitamin D3 (n = 47) in a weekly dose of 20,000 IU or placebo (n = 47) for a period of three to five years

Hypothesis

Experimental Design

Blood samples for preparation of RNA were drawn from the subjects and mRNA gene expression in blood was determined using microarray analyses.

Experimental Variables

Controls

Methods

The data was preprocessed by Bioconductor lumi package (version 2.26.4). It was log2 transformed and quantile normalized.

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE94138

Expected Samples:

94 Samples Loaded: 94

Species

Human (Homo sapiens)

Sample Source

Whole Blood

Disease

Vitamin D

Treatment Protocol

Growth Protocol

Extraction Protocol

standard as recommended by Illumina

Storage Conditions

Sample Set Spreadsheet

Please log in in order to upload files.

Samples Preview

Sample ID	Albumin	Weight	!Sample_title	tissue	Sex
GSM2470868	45	81.2	vitD:20215010	blood	female
GSM2470869	45.3	73.6	vitD:20215018	blood	male
GSM2470870	44.4	74.6	vitD:20215019	blood	male
GSM2470871	42.1	51.6	vitD:20215022	blood	female
GSM2470872	41.5	66.5	vitD:20215026	blood	female

Please log in in order to upload files.

File

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	Albumin	Weight	!Sample Title	Tissue	Sex	Treatment	Bmi	Calcium	Dnaassay	Phosphate	Sample Month Date	SampleID	Smoke	Height	Pth	Dbp
GSM2470868	45	81.2	vitD:20215010	blood	female	vitamin D	31.33	2.28	10	1.27	4	20215010	0	161	6.3	3.084
GSM2470869	45.3	73.6	vitD:20215018	blood	male	vitamin D	21.98	2.27	17	1.32	5	20215018	1	183	8.8	2.849
GSM2470870	44.4	74.6	vitD:20215019	blood	male	vitamin D	26.43	2.28	18	0.71	4	20215019	0	168	15.2	3.66
GSM2470871	42.1	51.6	vitD:20215022	blood	female	Placebo	21.2	2.21	21	1.07	4	20215022	0	156	6.1	3.068
GSM2470872	41.5	66.5	vitD:20215026	blood	female	vitamin D	31.2	2.25	27	1.15	4	20215026	1	146	5.5	3.12
GSM2470873	45.6	86.4	vitD:20215027	blood	male	vitamin D	27.58	2.39	24	1.04	4	20215027	1	177	2.9	3.315
GSM2470874	45	75.8	vitD:20215035	blood	male	vitamin D	22.15	2.36	40	1.3	5	20215035	0	185	7.9	3.606
GSM2470875	44.1	93.5	vitD:20215036	blood	male	Placebo	29.18	2.36	33	1.1	5	20215036	0	179	6.6	2.742
GSM2470876	48	102	vitD:20215037	blood	male	vitamin D	29.8	2.3	32	1.03	5	20215037	0	185	4.8	4.677
GSM2470877	43.9	88	vitD:20215038	blood	male	Placebo	28.09	2.34	35	0.84	5	20215038	0	177	4.4	3.468
GSM2470878	40.5	101.3	vitD:20215040	blood	female	Placebo	32.7	2.3	41	0.93	5	20215040	NA	176	7.8	3.287
GSM2470879	44.3	81.7	vitD:20215044	blood	female	Placebo	27.94	2.22	37	1.05	5	20215044	0	171	11.3	3.347
GSM2470880	45.3	87.6	vitD:20215048	blood	male	Placebo	27.65	2.4	55	1.1	5	20215048	0	178	6.1	2.747
GSM2470881	43.5	89.7	vitD:20215051	blood	male	Placebo	30.68	2.24	48	0.91	5	20215051	0	171	7	3.707
GSM2470882	46	84.2	vitD:20215055	blood	male	Placebo	30.19	2.31	58	0.76	6	20215055	0	167	6.9	3.624
GSM2470883	43	99.8	vitD:20215056	blood	female	Placebo	38.98	2.22	49	1.13	5	20215056	0	160	5.5	3.161
GSM2470884	39.6	81.8	vitD:20215059	blood	female	Placebo	31.17	2.3	65	0.99	6	20215059	0	162	6.3	3.024
GSM2470885	44.1	86.8	vitD:20215067	blood	male	Placebo	28.02	2.26	61	0.82	6	20215067	0	176	7.8	3.449
GSM2470886	NA	63.2	vitD:20215071	blood	female	vitamin D	28.09	2.36	64	1.09	6	20215071	0	150	5	3.546
GSM2470887	43	111.7	vitD:20215073	blood	male	Placebo	35.25	2.28	66	0.94	6	20215073	0	178	8.2	3.515
GSM2470888	42.8	96	vitD:20215077	blood	male	vitamin D	30.99	2.33	67	0.99	6	20215077	0	176	6.1	2.674
GSM2470889	40.1	70.1	vitD:20215078	blood	female	Placebo	25.44	2.51	69	1.08	6	20215078	1	166	2.8	2.33
GSM2470890	40.8	78	vitD:20215080	blood	male	Placebo	25.18	2.31	79	1.14	6	20215080	0	176	4.7	2.439
GSM2470891	40.9	88.9	vitD:20215081	blood	female	vitamin D	36.53	2.41	68	1.01	6	20215081	0	156	6.3	2.841
GSM2470892	44	76.4	vitD:20215082	blood	female	vitamin D	28.06	2.31	78	1.05	6	20215082	0	165	4.6	3.162
GSM2470893	44.3	61.3	vitD:20215083	blood	female	Placebo	23.36	2.35	70	1.24	6	20215083	1	162	5.9	3.875
GSM2470894	45.1	62.8	vitD:20215085	blood	male	Placebo	24.23	2.27	71	0.83	6	20215085	0	161	7	2.943
GSM2470895	44.3	50.4	vitD:20215088	blood	female	vitamin D	22.1	2.38	74	0.84	6	20215088	0	151	4.8	3.293
GSM2470896	45.5	104.5	vitD:20215099	blood	male	vitamin D	34.92	2.27	90	0.89	6	20215099	0	173	5.9	2.678
GSM2470897	41.9	90.3	vitD:20215102	blood	male	Placebo	28.18	2.24	86	0.96	6	20215102	0	179	6.4	2.795
GSM2470898	43.4	84.6	vitD:20215104	blood	male	vitamin D	26.4	2.31	89	0.73	6	20215104	0	179	6.1	2.619
GSM2470899	39.3	49.7	vitD:20215105	blood	female	Placebo	20.69	2.34	93	1.24	7	20215105	0	155	5.9	3.596
GSM2470900	43.5	91.6	vitD:20215109	blood	male	vitamin D	29.57	2.2	97	0.8	7	20215109	0	176	4.2	3.187
GSM2470901	41.6	86.1	vitD:20215113	blood	male	Placebo	27.17	2.22	106	1.05	7	20215113	0	178	2.8	3.284
GSM2470902	41.8	74.7	vitD:20215114	blood	male	vitamin D	25.25	2.21	121	1.09	8	20215114	0	172	4.4	2.592
GSM2470903	43.8	94.7	vitD:20215115	blood	male	vitamin D	32.39	2.27	100	1.11	7	20215115	0	171	6.5	3.105
GSM2470904	40.4	73.4	vitD:20215121	blood	female	Placebo	25.7	2.3	105	1	7	20215121	0	169	5.2	3.373
GSM2470905	44.2	84.6	vitD:20215128	blood	female	vitamin D	31.45	2.44	104	1.09	7	20215128	0	164	3.2	3.27
GSM2470906	42.1	67	vitD:20215223	blood	female	vitamin D	25.85	2.27	206	1.25	5	20215223	0	161	4.5	3.238
GSM2470907	45.3	84.5	vitD:20215258	blood	female	vitamin D	32.6	2.37	236	1.01	2	20215258	0	161	4.1	3.529
GSM2470908	44.8	81.3	vitD:20215269	blood	female	vitamin D	33.84	2.3	243	1.08	2	20215269	0	155	10.3	3.217
GSM2470909	39.6	66.7	vitD:20215284	blood	female	Placebo	25.42	2.31	266	1.02	2	20215284	0	162	3.3	2.866
GSM2470910	42.7	81	vitD:20215285	blood	male	vitamin D	30.12	2.45	268	1.18	2	20215285	1	164	5.7	2.865
GSM2470911	47.2	79.2	vitD:20215291	blood	male	Placebo	25.28	2.32	269	0.99	2	20215291	0	177	5.7	3.284
GSM2470912	47	89.8	vitD:20215292	blood	male	vitamin D	28.66	2.32	271	0.84	3	20215292	0	177	4.1	3.206
GSM2470913	41.8	109	vitD:20215295	blood	male	vitamin D	30.84	2.25	273	0.9	2	20215295	0	188	4.4	2.879
GSM2470914	45.5	73.1	vitD:20215297	blood	male	Placebo	23.07	2.3	278	0.95	3	20215297	1	178	7.2	2.531
GSM2470915	44.7	96.1	vitD:20215299	blood	male	vitamin D	31.74	2.23	274	0.98	3	20215299	0	174	3.8	3.176
GSM2470916	45.1	90.3	vitD:20215300	blood	male	Placebo	27.26	2.37	277	0.99	2	20215300	0	182	3.3	3.496
GSM2470917	45.2	95.3	vitD:20215305	blood	male	Placebo	30.08	2.25	280	0.81	3	20215305	0	178	6.9	2.869
GSM2470918	44.9	97.5	vitD:20215306	blood	male	Placebo	28.8	2.32	282	0.97	3	20215306	0	184	5.2	2.692
GSM2470919	45.1	72.8	vitD:20215307	blood	female	vitamin D	27.4	2.38	284	1.14	3	20215307	0	163	6.2	3.116
GSM2470920	41.6	90.6	vitD:20215322	blood	male	Placebo	29.58	2.29	294	1.1	4	20215322	0	175	4.8	3.155
GSM2470921	38.8	72.4	vitD:20215323	blood	male	vitamin D	23.11	2.35	295	0.96	4	20215323	0	177	7.1	4.228
GSM2470922	46.7	105.8	vitD:20215324	blood	male	Placebo	33.77	2.28	300	1.18	4	20215324	0	177	5.2	2.815
GSM2470923	38.1	57.3	vitD:20215335	blood	female	Placebo	22.11	2.36	310	1	4	20215335	0	161	4.5	3.407
GSM2470924	42.6	82.5	vitD:20215336	blood	male	vitamin D	28.55	2.27	308	1.14	4	20215336	0	170	7.2	2.772
GSM2470925	44.1	93.5	vitD:20215338	blood	female	vitamin D	35.19	2.3	332	0.84	6	20215338	1	163	4.8	3.021
GSM2470926	44.3	80.5	vitD:20215339	blood	male	Placebo	27.85	2.32	309	0.89	4	20215339	0	170	4.5	3.276
GSM2470927	43.1	79.2	vitD:20215341	blood	female	vitamin D	30.94	2.37	312	1.15	6	20215341	0	160	5	3.278
GSM2470928	46.4	90.7	vitD:20215345	blood	male	vitamin D	27.69	2.3	314	0.84	4	20215345	1	181	6.3	3.679
GSM2470929	41.6	76	vitD:20215349	blood	male	vitamin D	22.45	2.22	320	0.9	5	20215349	0	184	4.4	2.999
GSM2470930	41.7	79.2	vitD:20215353	blood	male	vitamin D	26.16	2.26	324	0.95	5	20215353	1	174	5.9	3.059
GSM2470931	42.5	71.1	vitD:20215354	blood	female	vitamin D	26.12	2.29	326	1.23	5	20215354	1	165	6.3	3.369
GSM2470932	45.9	105.7	vitD:20215357	blood	male	Placebo	33.74	2.23	347	1.12	7	20215357	0	177	7.6	3.301
GSM2470933	40.8	61.7	vitD:20215360	blood	female	vitamin D	23.8	2.28	328	1.24	7	20215360	0	161	4.5	3.111
GSM2470934	45.4	73	vitD:20215362	blood	female	Placebo	30.78	2.36	342	1.21	7	20215362	0	154	6.3	2.998
GSM2470935	43.6	88	vitD:20215366	blood	male	Placebo	30.45	2.16	343	0.68	7	20215366	0	170	6.5	3.796
GSM2470936	NA	88.1	vitD:20215368	blood	male	Placebo	31.97	2.21	348	0.81	7	20215368	0	166	10.2	2.66
GSM2470937	41.4	106.6	vitD:20215369	blood	male	vitamin D	36.03	2.35	337	0.96	6	20215369	0	172	14.5	3.176
GSM2470938	41.7	85.6	vitD:20215370	blood	male	Placebo	27.02	2.41	329	1.49	6	20215370	0	178	2.5	3.261
GSM2470939	47.4	72.9	vitD:20215372	blood	female	vitamin D	26.14	2.37	354	0.86	8	20215372	0	167	6.3	3.141
GSM2470940	NA	73.1	vitD:20215383	blood	female	vitamin D	29.66	2.39	349	1.03	7	20215383	0	157	3.1	3.283
GSM2470941	42.5	77.4	vitD:20215389	blood	male	vitamin D	29.49	2.28	333	1.12	6	20215389	0	162	5.2	3.424
GSM2470942	38.8	78.5	vitD:20215391	blood	female	vitamin D	26.85	2.21	334	1.21	6	20215391	1	171	4.5	3.202
GSM2470943	47	104.2	vitD:20215482	blood	male	Placebo	28.86	2.39	450	0.84	5	20215482	0	190	3.4	2.91
GSM2470944	48.8	87.1	vitD:20215524	blood	male	Placebo	29.1	2.42	487	1.03	2	20215524	0	173	4.4	3.38
GSM2470945	47.1	102.5	vitD:20215526	blood	male	vitamin D	28.69	2.42	489	1.13	2	20215526	0	189	4.5	3.2
GSM2470946	43.8	100.5	vitD:20215528	blood	male	Placebo	31.37	2.32	493	1.17	2	20215528	1	179	2.6	2.712
GSM2470947	45.3	94.8	vitD:20215529	blood	male	Placebo	30.26	2.39	491	1.02	2	20215529	0	177	4.8	2.7
GSM2470948	44.4	100	vitD:20215531	blood	male	Placebo	32.28	2.3	494	1.16	2	20215531	0	176	4.5	3.263
GSM2470949	47.1	121.6	vitD:20215539	blood	male	Placebo	37.12	2.39	499	1.01	2	20215539	0	181	2.8	3.373
GSM2470950	44.3	100.5	vitD:20215541	blood	male	Placebo	29.36	2.29	497	0.88	2	20215541	0	185	6.5	2.588
GSM2470951	44	102.5	vitD:20215543	blood	male	Placebo	34.25	2.21	506	0.95	2	20215543	0	173	6.9	2.506
GSM2470952	45.3	102.4	vitD:20215544	blood	male	vitamin D	33.82	2.49	517	0.91	3	20215544	0	174	3.7	3.038
GSM2470953	44.9	85.6	vitD:20215545	blood	male	Placebo	28.6	2.15	509	0.7	2	20215545	0	173	5.9	3.621
GSM2470954	43.2	103.3	vitD:20215546	blood	male	vitamin D	35.33	2.23	510	0.98	3	20215546	0	171	6.2	2.979
GSM2470955	42.9	89.5	vitD:20215548	blood	male	Placebo	29.22	2.26	507	1.05	3	20215548	0	175	4.6	3.337
GSM2470956	43.5	90.3	vitD:20215549	blood	male	vitamin D	27.56	2.27	508	1.26	3	20215549	0	181	5.6	2.762
GSM2470957	48.2	92.7	vitD:20215551	blood	male	vitamin D	28.61	2.48	513	0.84	3	20215551	0	180	6.9	2.487
GSM2470958	45.8	76.1	vitD:20215552	blood	male	Placebo	28.64	2.34	515	1.21	3	20215552	0	163	2.7	2.807
GSM2470959	46.4	77.6	vitD:20215553	blood	male	vitamin D	27.82	2.41	512	1.01	3	20215553	0	167	5.9	2.199
GSM2470960	44.8	93.5	vitD:20215555	blood	male	Placebo	30.88	2.25	516	1.26	3	20215555	0	174	6.3	3.036
GSM2470961	40.3	95.7	vitD:20215557	blood	male	vitamin D	31.25	2.16	520	0.95	3	20215557	1	175	4.4	2.886

Group Sets View in Gene Expression Browser

Name
3mo		View
All Samples		View
Group		View
Group-Time	Default	View
In order to make new Group Sets or change settings, please log in.

Module Analysis

Group Set
3mo
All Samples
Group
Group-Time

SIDRA