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A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (HIV Datasets)-GSE100151

In Progress
Clinical

A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (HIV Datasets)-GSE100151

Purpose

Development of a cost-effective and practical targeted transcriptional fingerprinting assay (TFA) for monitoring a diverse repertoire of immune responses identified in the human blood transcriptome relying on a modular transcriptional repertoire built on the basis of variations in transcript abundance measured on a genome wide scale in the blood of nearly 1000 subjects across 16 immunologic conditions.

Hypothesis

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Experimental Design
HIV (28 condition, 35 control, 63 total)
Experimental Variables

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Controls

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Methods

The data were normalised using average normalization with Genome Studio

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=gse100151

Microarray
Illumina HumanWG-6 v3
63 Samples Loaded: 63
Human (Homo sapiens)
Whole Blood
HIV
RNA was extracted with MagMAX™ RNA Isolation Kit
Sample Set Spreadsheet
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Samples Preview
Sample ID Illness GEOsampleID GEOID originalBRI BRIsampleID
4424548047_A HIV GSM2672174 GSE100151 4424548047_A: whole blood-HIV-HIV 4424548047_A
4424548047_F HIV GSM2672175 GSE100151 4424548047_F: whole blood-HIV-HIV 4424548047_F
4424548047_L Control GSM2672149 GSE100151 4424548047_L: whole blood-HIV-Control 4424548047_L
4424548048_B HIV GSM2672176 GSE100151 4424548048_B: whole blood-HIV-HIV 4424548048_B
4424548048_G HIV GSM2672177 GSE100151 4424548048_G: whole blood-HIV-HIV 4424548048_G

Upload Files

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Browse Files

File
Mod_GSE100151_Sample_annotaion.csv
Sample Set Spreadsheet
Raw Signal
Raw Signal
  •   |  View in GXB »
Clinical Datasource
Links
https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=gse100151

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID Illness GEOsampleID GEOID OriginalBRI BRIsampleID Source Dataset
4433719009_D
Control
GSM2672136
GSE100151
4433719009_D: whole blood-HIV-Control
4433719009_D
whole blood
HIV
4424548056_A
HIV
GSM2672190
GSE100151
4424548056_A: whole blood-HIV-HIV
4424548056_A
whole blood
HIV
4433719009_G
Control
GSM2672137
GSE100151
4433719009_G: whole blood-HIV-Control
4433719009_G
whole blood
HIV
4433719009_I
Control
GSM2672138
GSE100151
4433719009_I: whole blood-HIV-Control
4433719009_I
whole blood
HIV
4424548056_G
HIV
GSM2672191
GSE100151
4424548056_G: whole blood-HIV-HIV
4424548056_G
whole blood
HIV
4433719009_K
Control
GSM2672139
GSE100151
4433719009_K: whole blood-HIV-Control
4433719009_K
whole blood
HIV
4433719010_A
Control
GSM2672140
GSE100151
4433719010_A: whole blood-HIV-Control
4433719010_A
whole blood
HIV
4433719010_C
Control
GSM2672141
GSE100151
4433719010_C: whole blood-HIV-Control
4433719010_C
whole blood
HIV
4433719010_G
Control
GSM2672142
GSE100151
4433719010_G: whole blood-HIV-Control
4433719010_G
whole blood
HIV
4424548057_D
Control
GSM2672150
GSE100151
4424548057_D: whole blood-HIV-Control
4424548057_D
whole blood
HIV
4433719010_H
Control
GSM2672143
GSE100151
4433719010_H: whole blood-HIV-Control
4433719010_H
whole blood
HIV
4424548057_E
Control
GSM2672151
GSE100151
4424548057_E: whole blood-HIV-Control
4424548057_E
whole blood
HIV
4433719010_J
Control
GSM2672144
GSE100151
4433719010_J: whole blood-HIV-Control
4433719010_J
whole blood
HIV
4424548057_G
Control
GSM2672152
GSE100151
4424548057_G: whole blood-HIV-Control
4424548057_G
whole blood
HIV
4424548057_H
Control
GSM2672153
GSE100151
4424548057_H: whole blood-HIV-Control
4424548057_H
whole blood
HIV
4424548057_J
Control
GSM2672154
GSE100151
4424548057_J: whole blood-HIV-Control
4424548057_J
whole blood
HIV
4433719008_B
Control
GSM2672145
GSE100151
4433719008_B: whole blood-HIV-Control
4433719008_B
whole blood
HIV
4433719008_C
Control
GSM2672146
GSE100151
4433719008_C: whole blood-HIV-Control
4433719008_C
whole blood
HIV
4424548057_L
Control
GSM2672155
GSE100151
4424548057_L: whole blood-HIV-Control
4424548057_L
whole blood
HIV
4424548059_A
Control
GSM2672156
GSE100151
4424548059_A: whole blood-HIV-Control
4424548059_A
whole blood
HIV
4433719008_E
Control
GSM2672147
GSE100151
4433719008_E: whole blood-HIV-Control
4433719008_E
whole blood
HIV
4424548059_C
Control
GSM2672157
GSE100151
4424548059_C: whole blood-HIV-Control
4424548059_C
whole blood
HIV
4433719008_G
Control
GSM2672148
GSE100151
4433719008_G: whole blood-HIV-Control
4433719008_G
whole blood
HIV
4424548059_E
Control
GSM2672158
GSE100151
4424548059_E: whole blood-HIV-Control
4424548059_E
whole blood
HIV
4424548059_F
Control
GSM2672159
GSE100151
4424548059_F: whole blood-HIV-Control
4424548059_F
whole blood
HIV
4424548059_G
Control
GSM2672160
GSE100151
4424548059_G: whole blood-HIV-Control
4424548059_G
whole blood
HIV
4424548059_H
Control
GSM2672161
GSE100151
4424548059_H: whole blood-HIV-Control
4424548059_H
whole blood
HIV
4424548047_A
HIV
GSM2672174
GSE100151
4424548047_A: whole blood-HIV-HIV
4424548047_A
whole blood
HIV
4424548059_K
Control
GSM2672162
GSE100151
4424548059_K: whole blood-HIV-Control
4424548059_K
whole blood
HIV
4424548059_L
Control
GSM2672163
GSE100151
4424548059_L: whole blood-HIV-Control
4424548059_L
whole blood
HIV
4424548047_F
HIV
GSM2672175
GSE100151
4424548047_F: whole blood-HIV-HIV
4424548047_F
whole blood
HIV
4424548047_L
Control
GSM2672149
GSE100151
4424548047_L: whole blood-HIV-Control
4424548047_L
whole blood
HIV
4424548048_B
HIV
GSM2672176
GSE100151
4424548048_B: whole blood-HIV-HIV
4424548048_B
whole blood
HIV
4424548048_G
HIV
GSM2672177
GSE100151
4424548048_G: whole blood-HIV-HIV
4424548048_G
whole blood
HIV
4424548049_A
HIV
GSM2672178
GSE100151
4424548049_A: whole blood-HIV-HIV
4424548049_A
whole blood
HIV
4433719001_G
HIV
GSM2672164
GSE100151
4433719001_G: whole blood-HIV-HIV
4433719001_G
whole blood
HIV
4424548049_G
HIV
GSM2672179
GSE100151
4424548049_G: whole blood-HIV-HIV
4424548049_G
whole blood
HIV
4433719001_L
Control
GSM2672129
GSE100151
4433719001_L: whole blood-HIV-Control
4433719001_L
whole blood
HIV
4433719002_A
HIV
GSM2672165
GSE100151
4433719002_A: whole blood-HIV-HIV
4433719002_A
whole blood
HIV
4424548050_A
HIV
GSM2672180
GSE100151
4424548050_A: whole blood-HIV-HIV
4424548050_A
whole blood
HIV
4433719002_G
HIV
GSM2672166
GSE100151
4433719002_G: whole blood-HIV-HIV
4433719002_G
whole blood
HIV
4424548050_G
HIV
GSM2672181
GSE100151
4424548050_G: whole blood-HIV-HIV
4424548050_G
whole blood
HIV
4433719003_A
HIV
GSM2672167
GSE100151
4433719003_A: whole blood-HIV-HIV
4433719003_A
whole blood
HIV
4424548051_A
HIV
GSM2672182
GSE100151
4424548051_A: whole blood-HIV-HIV
4424548051_A
whole blood
HIV
4433719003_E
HIV
GSM2672168
GSE100151
4433719003_E: whole blood-HIV-HIV
4433719003_E
whole blood
HIV
4433719003_I
HIV
GSM2672169
GSE100151
4433719003_I: whole blood-HIV-HIV
4433719003_I
whole blood
HIV
4424548051_G
HIV
GSM2672183
GSE100151
4424548051_G: whole blood-HIV-HIV
4424548051_G
whole blood
HIV
4433719005_C
HIV
GSM2672170
GSE100151
4433719005_C: whole blood-HIV-HIV
4433719005_C
whole blood
HIV
4424548052_A
HIV
GSM2672184
GSE100151
4424548052_A: whole blood-HIV-HIV
4424548052_A
whole blood
HIV
4433719005_J
HIV
GSM2672171
GSE100151
4433719005_J: whole blood-HIV-HIV
4433719005_J
whole blood
HIV
4424548052_G
HIV
GSM2672185
GSE100151
4424548052_G: whole blood-HIV-HIV
4424548052_G
whole blood
HIV
4424548053_C
HIV
GSM2672186
GSE100151
4424548053_C: whole blood-HIV-HIV
4424548053_C
whole blood
HIV
4433719006_J
Control
GSM2672130
GSE100151
4433719006_J: whole blood-HIV-Control
4433719006_J
whole blood
HIV
4424548053_G
HIV
GSM2672187
GSE100151
4424548053_G: whole blood-HIV-HIV
4424548053_G
whole blood
HIV
4433719006_L
Control
GSM2672131
GSE100151
4433719006_L: whole blood-HIV-Control
4433719006_L
whole blood
HIV
4433719007_A
HIV
GSM2672172
GSE100151
4433719007_A: whole blood-HIV-HIV
4433719007_A
whole blood
HIV
4424548055_A
HIV
GSM2672188
GSE100151
4424548055_A: whole blood-HIV-HIV
4424548055_A
whole blood
HIV
4433719007_F
HIV
GSM2672173
GSE100151
4433719007_F: whole blood-HIV-HIV
4433719007_F
whole blood
HIV
4433719007_J
Control
GSM2672132
GSE100151
4433719007_J: whole blood-HIV-Control
4433719007_J
whole blood
HIV
4424548055_G
HIV
GSM2672189
GSE100151
4424548055_G: whole blood-HIV-HIV
4424548055_G
whole blood
HIV
4433719007_L
Control
GSM2672133
GSE100151
4433719007_L: whole blood-HIV-Control
4433719007_L
whole blood
HIV
4433719009_A
Control
GSM2672134
GSE100151
4433719009_A: whole blood-HIV-Control
4433719009_A
whole blood
HIV
4433719009_B
Control
GSM2672135
GSE100151
4433719009_B: whole blood-HIV-Control
4433719009_B
whole blood
HIV

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