Sample Set Annotation Tool: A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (B-cell deficiency Datasets)-GSE100156

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Development of a cost-effective and practical targeted transcriptional fingerprinting assay (TFA) for monitoring a diverse repertoire of immune responses identified in the human blood transcriptome relying on a modular transcriptional repertoire built on the basis of variations in transcript abundance measured on a genome wide scale in the blood of nearly 1000 subjects across 16 immunologic conditions.

Hypothesis

Experimental Design

Experimental Variables

Controls

Methods

RNA was extracted with MagMAX™ RNA Isolation Kit

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE100156

Expected Samples:

33 Samples Loaded: 33

Species

Human (Homo sapiens)

Sample Source

Whole Blood

Disease

B-Cell Deficiency

Treatment Protocol

Growth Protocol

Extraction Protocol

RNA was extracted with MagMAX™ RNA Isolation Kit

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	Illness	GEOsampleID	GEOID	originalBRI	BRIsampleID
4424548025_B	Control	GSM2672462	GSE100156	4424548025_B: whole blood-Bcelldeficiency-Control	4424548025_B
4424548025_C	Control	GSM2672458	GSE100156	4424548025_C: whole blood-Bcelldeficiency-Control	4424548025_C
4424548025_D	Control	GSM2672454	GSE100156	4424548025_D: whole blood-Bcelldeficiency-Control	4424548025_D
4424548025_E	Control	GSM2672464	GSE100156	4424548025_E: whole blood-Bcelldeficiency-Control	4424548025_E
4424548025_F	Control	GSM2672460	GSE100156	4424548025_F: whole blood-Bcelldeficiency-Control	4424548025_F

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File
GSE100156_Sample_annotaion-whole blood-Bcelldeficiency.csv Sample Set Spreadsheet

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	Illness	GEOsampleID	GEOID	OriginalBRI	BRIsampleID	Source	Dataset
4424548025_B	Control	GSM2672462	GSE100156	4424548025_B: whole blood-Bcelldeficiency-Control	4424548025_B	whole blood	Bcelldeficiency
4424548025_C	Control	GSM2672458	GSE100156	4424548025_C: whole blood-Bcelldeficiency-Control	4424548025_C	whole blood	Bcelldeficiency
4424548025_D	Control	GSM2672454	GSE100156	4424548025_D: whole blood-Bcelldeficiency-Control	4424548025_D	whole blood	Bcelldeficiency
4424548025_E	Control	GSM2672464	GSE100156	4424548025_E: whole blood-Bcelldeficiency-Control	4424548025_E	whole blood	Bcelldeficiency
4424548025_F	Control	GSM2672460	GSE100156	4424548025_F: whole blood-Bcelldeficiency-Control	4424548025_F	whole blood	Bcelldeficiency
4424548025_G	Bcell	GSM2672465	GSE100156	4424548025_G: whole blood-Bcelldeficiency-Bcell	4424548025_G	whole blood	Bcelldeficiency
4424548025_H	Bcell	GSM2672479	GSE100156	4424548025_H: whole blood-Bcelldeficiency-Bcell	4424548025_H	whole blood	Bcelldeficiency
4424548025_I	Bcell	GSM2672473	GSE100156	4424548025_I: whole blood-Bcelldeficiency-Bcell	4424548025_I	whole blood	Bcelldeficiency
4424548025_J	Bcell	GSM2672467	GSE100156	4424548025_J: whole blood-Bcelldeficiency-Bcell	4424548025_J	whole blood	Bcelldeficiency
4424548025_K	Bcell	GSM2672481	GSE100156	4424548025_K: whole blood-Bcelldeficiency-Bcell	4424548025_K	whole blood	Bcelldeficiency
4424548025_L	Bcell	GSM2672475	GSE100156	4424548025_L: whole blood-Bcelldeficiency-Bcell	4424548025_L	whole blood	Bcelldeficiency
4424548029_A	Bcell	GSM2672469	GSE100156	4424548029_A: whole blood-Bcelldeficiency-Bcell	4424548029_A	whole blood	Bcelldeficiency
4424548029_B	Bcell	GSM2672483	GSE100156	4424548029_B: whole blood-Bcelldeficiency-Bcell	4424548029_B	whole blood	Bcelldeficiency
4424548029_C	Bcell	GSM2672477	GSE100156	4424548029_C: whole blood-Bcelldeficiency-Bcell	4424548029_C	whole blood	Bcelldeficiency
4424548029_D	Bcell	GSM2672471	GSE100156	4424548029_D: whole blood-Bcelldeficiency-Bcell	4424548029_D	whole blood	Bcelldeficiency
4424548029_E	Bcell	GSM2672466	GSE100156	4424548029_E: whole blood-Bcelldeficiency-Bcell	4424548029_E	whole blood	Bcelldeficiency
4424548029_F	Bcell	GSM2672480	GSE100156	4424548029_F: whole blood-Bcelldeficiency-Bcell	4424548029_F	whole blood	Bcelldeficiency
4424548029_G	Bcell	GSM2672474	GSE100156	4424548029_G: whole blood-Bcelldeficiency-Bcell	4424548029_G	whole blood	Bcelldeficiency
4424548029_H	Control	GSM2672456	GSE100156	4424548029_H: whole blood-Bcelldeficiency-Control	4424548029_H	whole blood	Bcelldeficiency
4424548029_I	Control	GSM2672452	GSE100156	4424548029_I: whole blood-Bcelldeficiency-Control	4424548029_I	whole blood	Bcelldeficiency
4424548029_J	Control	GSM2672461	GSE100156	4424548029_J: whole blood-Bcelldeficiency-Control	4424548029_J	whole blood	Bcelldeficiency
4424548029_K	Control	GSM2672457	GSE100156	4424548029_K: whole blood-Bcelldeficiency-Control	4424548029_K	whole blood	Bcelldeficiency
4424548029_L	Control	GSM2672453	GSE100156	4424548029_L: whole blood-Bcelldeficiency-Control	4424548029_L	whole blood	Bcelldeficiency
4424548031_A	Control	GSM2672463	GSE100156	4424548031_A: whole blood-Bcelldeficiency-Control	4424548031_A	whole blood	Bcelldeficiency
4424548031_B	Control	GSM2672459	GSE100156	4424548031_B: whole blood-Bcelldeficiency-Control	4424548031_B	whole blood	Bcelldeficiency
4424548031_C	Bcell	GSM2672468	GSE100156	4424548031_C: whole blood-Bcelldeficiency-Bcell	4424548031_C	whole blood	Bcelldeficiency
4424548031_D	Bcell	GSM2672482	GSE100156	4424548031_D: whole blood-Bcelldeficiency-Bcell	4424548031_D	whole blood	Bcelldeficiency
4424548031_E	Bcell	GSM2672476	GSE100156	4424548031_E: whole blood-Bcelldeficiency-Bcell	4424548031_E	whole blood	Bcelldeficiency
4424548031_F	Bcell	GSM2672470	GSE100156	4424548031_F: whole blood-Bcelldeficiency-Bcell	4424548031_F	whole blood	Bcelldeficiency
4424548031_G	Bcell	GSM2672484	GSE100156	4424548031_G: whole blood-Bcelldeficiency-Bcell	4424548031_G	whole blood	Bcelldeficiency
4424548031_H	Bcell	GSM2672478	GSE100156	4424548031_H: whole blood-Bcelldeficiency-Bcell	4424548031_H	whole blood	Bcelldeficiency
4424548031_I	Bcell	GSM2672472	GSE100156	4424548031_I: whole blood-Bcelldeficiency-Bcell	4424548031_I	whole blood	Bcelldeficiency
4424548031_L	Control	GSM2672455	GSE100156	4424548031_L: whole blood-Bcelldeficiency-Control	4424548031_L	whole blood	Bcelldeficiency

Group Sets View in Gene Expression Browser

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Module Analysis

Group Set
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Illness

SIDRA