Sample Set Annotation Tool: A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (Pregnancy Datasets)-GSE100157

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Development of a cost-effective and practical targeted transcriptional fingerprinting assay (TFA) for monitoring a diverse repertoire of immune responses identified in the human blood transcriptome relying on a modular transcriptional repertoire built on the basis of variations in transcript abundance measured on a genome wide scale in the blood of nearly 1000 subjects across 16 immunologic conditions.

Hypothesis

Experimental Design

Experimental Variables

Controls

Methods

RNA was extracted with MagMAX™ RNA Isolation Kit

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE100157

Expected Samples:

45 Samples Loaded: 45

Species

Human (Homo sapiens)

Sample Source

Whole Blood

Disease

Pregnancy

Treatment Protocol

Growth Protocol

Extraction Protocol

RNA was extracted with MagMAX™ RNA Isolation Kit

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	Illness	GEOsampleID	GEOID	originalBRI	BRIsampleID
5083896027_A	Control	GSM2672519	GSE100157	5083896027_A: whole blood-Pregnancy-Control	5083896027_A
5083896027_B	Control	GSM2672529	GSE100157	5083896027_B: whole blood-Pregnancy-Control	5083896027_B
5083896027_C	Pregnancy	GSM2672490	GSE100157	5083896027_C: whole blood-Pregnancy-Pregnancy	5083896027_C
5083896027_D	Pregnancy	GSM2672513	GSE100157	5083896027_D: whole blood-Pregnancy-Pregnancy	5083896027_D
5083896027_E	Pregnancy	GSM2672507	GSE100157	5083896027_E: whole blood-Pregnancy-Pregnancy	5083896027_E

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File
GSE100157_Sample_annotaion-whole blood-Pregnancy.csv Sample Set Spreadsheet

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	Illness	GEOsampleID	GEOID	OriginalBRI	BRIsampleID	Source	Dataset
5083896027_A	Control	GSM2672519	GSE100157	5083896027_A: whole blood-Pregnancy-Control	5083896027_A	whole blood	Pregnancy
5083896027_B	Control	GSM2672529	GSE100157	5083896027_B: whole blood-Pregnancy-Control	5083896027_B	whole blood	Pregnancy
5083896027_C	Pregnancy	GSM2672490	GSE100157	5083896027_C: whole blood-Pregnancy-Pregnancy	5083896027_C	whole blood	Pregnancy
5083896027_D	Pregnancy	GSM2672513	GSE100157	5083896027_D: whole blood-Pregnancy-Pregnancy	5083896027_D	whole blood	Pregnancy
5083896027_E	Pregnancy	GSM2672507	GSE100157	5083896027_E: whole blood-Pregnancy-Pregnancy	5083896027_E	whole blood	Pregnancy
5083896027_F	Pregnancy	GSM2672511	GSE100157	5083896027_F: whole blood-Pregnancy-Pregnancy	5083896027_F	whole blood	Pregnancy
5083896027_G	Pregnancy	GSM2672500	GSE100157	5083896027_G: whole blood-Pregnancy-Pregnancy	5083896027_G	whole blood	Pregnancy
5083896027_H	Pregnancy	GSM2672510	GSE100157	5083896027_H: whole blood-Pregnancy-Pregnancy	5083896027_H	whole blood	Pregnancy
5083896027_I	Control	GSM2672525	GSE100157	5083896027_I: whole blood-Pregnancy-Control	5083896027_I	whole blood	Pregnancy
5083896027_J	Pregnancy	GSM2672493	GSE100157	5083896027_J: whole blood-Pregnancy-Pregnancy	5083896027_J	whole blood	Pregnancy
5083896027_K	Pregnancy	GSM2672485	GSE100157	5083896027_K: whole blood-Pregnancy-Pregnancy	5083896027_K	whole blood	Pregnancy
5083896027_L	Control	GSM2672521	GSE100157	5083896027_L: whole blood-Pregnancy-Control	5083896027_L	whole blood	Pregnancy
5083896031_A	Pregnancy	GSM2672503	GSE100157	5083896031_A: whole blood-Pregnancy-Pregnancy	5083896031_A	whole blood	Pregnancy
5083896031_B	Pregnancy	GSM2672496	GSE100157	5083896031_B: whole blood-Pregnancy-Pregnancy	5083896031_B	whole blood	Pregnancy
5083896031_C	Control	GSM2672516	GSE100157	5083896031_C: whole blood-Pregnancy-Control	5083896031_C	whole blood	Pregnancy
5083896031_D	Control	GSM2672527	GSE100157	5083896031_D: whole blood-Pregnancy-Control	5083896031_D	whole blood	Pregnancy
5083896031_E	Pregnancy	GSM2672488	GSE100157	5083896031_E: whole blood-Pregnancy-Pregnancy	5083896031_E	whole blood	Pregnancy
5083896031_F	Pregnancy	GSM2672505	GSE100157	5083896031_F: whole blood-Pregnancy-Pregnancy	5083896031_F	whole blood	Pregnancy
5083896031_G	Pregnancy	GSM2672498	GSE100157	5083896031_G: whole blood-Pregnancy-Pregnancy	5083896031_G	whole blood	Pregnancy
5083896031_H	Control	GSM2672523	GSE100157	5083896031_H: whole blood-Pregnancy-Control	5083896031_H	whole blood	Pregnancy
5083896031_I	Pregnancy	GSM2672491	GSE100157	5083896031_I: whole blood-Pregnancy-Pregnancy	5083896031_I	whole blood	Pregnancy
5083896031_J	Pregnancy	GSM2672508	GSE100157	5083896031_J: whole blood-Pregnancy-Pregnancy	5083896031_J	whole blood	Pregnancy
5083896031_K	Pregnancy	GSM2672501	GSE100157	5083896031_K: whole blood-Pregnancy-Pregnancy	5083896031_K	whole blood	Pregnancy
5083896031_L	Pregnancy	GSM2672494	GSE100157	5083896031_L: whole blood-Pregnancy-Pregnancy	5083896031_L	whole blood	Pregnancy
5083896032_A	Pregnancy	GSM2672486	GSE100157	5083896032_A: whole blood-Pregnancy-Pregnancy	5083896032_A	whole blood	Pregnancy
5083896032_B	Control	GSM2672518	GSE100157	5083896032_B: whole blood-Pregnancy-Control	5083896032_B	whole blood	Pregnancy
5083896032_C	Pregnancy	GSM2672504	GSE100157	5083896032_C: whole blood-Pregnancy-Pregnancy	5083896032_C	whole blood	Pregnancy
5083896032_D	Pregnancy	GSM2672497	GSE100157	5083896032_D: whole blood-Pregnancy-Pregnancy	5083896032_D	whole blood	Pregnancy
5083896032_E	Control	GSM2672528	GSE100157	5083896032_E: whole blood-Pregnancy-Control	5083896032_E	whole blood	Pregnancy
5083896032_F	Control	GSM2672524	GSE100157	5083896032_F: whole blood-Pregnancy-Control	5083896032_F	whole blood	Pregnancy
5083896032_G	Pregnancy	GSM2672514	GSE100157	5083896032_G: whole blood-Pregnancy-Pregnancy	5083896032_G	whole blood	Pregnancy
5083896032_H	Control	GSM2672520	GSE100157	5083896032_H: whole blood-Pregnancy-Control	5083896032_H	whole blood	Pregnancy
5083896032_I	Pregnancy	GSM2672489	GSE100157	5083896032_I: whole blood-Pregnancy-Pregnancy	5083896032_I	whole blood	Pregnancy
5083896032_J	Pregnancy	GSM2672506	GSE100157	5083896032_J: whole blood-Pregnancy-Pregnancy	5083896032_J	whole blood	Pregnancy
5083896032_K	Control	GSM2672515	GSE100157	5083896032_K: whole blood-Pregnancy-Control	5083896032_K	whole blood	Pregnancy
5083896032_L	Pregnancy	GSM2672512	GSE100157	5083896032_L: whole blood-Pregnancy-Pregnancy	5083896032_L	whole blood	Pregnancy
5083896033_A	Control	GSM2672526	GSE100157	5083896033_A: whole blood-Pregnancy-Control	5083896033_A	whole blood	Pregnancy
5083896033_B	Pregnancy	GSM2672499	GSE100157	5083896033_B: whole blood-Pregnancy-Pregnancy	5083896033_B	whole blood	Pregnancy
5083896033_C	Pregnancy	GSM2672492	GSE100157	5083896033_C: whole blood-Pregnancy-Pregnancy	5083896033_C	whole blood	Pregnancy
5083896033_D	Control	GSM2672522	GSE100157	5083896033_D: whole blood-Pregnancy-Control	5083896033_D	whole blood	Pregnancy
5083896033_E	Pregnancy	GSM2672509	GSE100157	5083896033_E: whole blood-Pregnancy-Pregnancy	5083896033_E	whole blood	Pregnancy
5083896033_F	Pregnancy	GSM2672502	GSE100157	5083896033_F: whole blood-Pregnancy-Pregnancy	5083896033_F	whole blood	Pregnancy
5083896033_G	Pregnancy	GSM2672495	GSE100157	5083896033_G: whole blood-Pregnancy-Pregnancy	5083896033_G	whole blood	Pregnancy
5083896033_H	Control	GSM2672517	GSE100157	5083896033_H: whole blood-Pregnancy-Control	5083896033_H	whole blood	Pregnancy
5083896033_I	Pregnancy	GSM2672487	GSE100157	5083896033_I: whole blood-Pregnancy-Pregnancy	5083896033_I	whole blood	Pregnancy

Group Sets View in Gene Expression Browser

Name
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Module Analysis

Group Set
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Illness

SIDRA