Sample Set Annotation Tool: A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (Melanoma Datasets)-GSE100158

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Development of a cost-effective and practical targeted transcriptional fingerprinting assay (TFA) for monitoring a diverse repertoire of immune responses identified in the human blood transcriptome relying on a modular transcriptional repertoire built on the basis of variations in transcript abundance measured on a genome wide scale in the blood of nearly 1000 subjects across 16 immunologic conditions.

Hypothesis

Experimental Design

Experimental Variables

Controls

Methods

RNA was extracted with MagMAX™ RNA Isolation Kit

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE100158

Expected Samples:

27 Samples Loaded: 27

Species

Human (Homo sapiens)

Sample Source

Whole Blood

Disease

Melanoma

Treatment Protocol

Growth Protocol

Extraction Protocol

RNA was extracted with MagMAX™ RNA Isolation Kit

Storage Conditions

Sample Set Spreadsheet

Please log in in order to upload files.

Samples Preview

Sample ID	Illness	GEOsampleID	GEOID	originalBRI	BRIsampleID
4710384022_A	Melanoma	GSM2672552	GSE100158	4710384022_A: whole blood-Melanoma-Melanoma	4710384022_A
4710384022_B	Melanoma	GSM2672546	GSE100158	4710384022_B: whole blood-Melanoma-Melanoma	4710384022_B
4710384022_D	Melanoma	GSM2672540	GSE100158	4710384022_D: whole blood-Melanoma-Melanoma	4710384022_D
4710384022_H	Melanoma	GSM2672555	GSE100158	4710384022_H: whole blood-Melanoma-Melanoma	4710384022_H
4710384022_I	Melanoma	GSM2672548	GSE100158	4710384022_I: whole blood-Melanoma-Melanoma	4710384022_I

Please log in in order to upload files.

File
GSE100158_Sample_annotaion-whole blood-Melanoma.csv Sample Set Spreadsheet

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	Illness	GEOsampleID	GEOID	OriginalBRI	BRIsampleID	Source	Dataset
4710384024_L	Melanoma	GSM2672538	GSE100158	4710384024_L: whole blood-Melanoma-Melanoma	4710384024_L	whole blood	Melanoma
4710384046_D	Melanoma	GSM2672554	GSE100158	4710384046_D: whole blood-Melanoma-Melanoma	4710384046_D	whole blood	Melanoma
4710384046_F	Melanoma	GSM2672547	GSE100158	4710384046_F: whole blood-Melanoma-Melanoma	4710384046_F	whole blood	Melanoma
4710384028_F	Melanoma	GSM2672553	GSE100158	4710384028_F: whole blood-Melanoma-Melanoma	4710384028_F	whole blood	Melanoma
4710384028_G	Control	GSM2672533	GSE100158	4710384028_G: whole blood-Melanoma-Control	4710384028_G	whole blood	Melanoma
4710384046_L	Melanoma	GSM2672542	GSE100158	4710384046_L: whole blood-Melanoma-Melanoma	4710384046_L	whole blood	Melanoma
4710384028_L	Melanoma	GSM2672541	GSE100158	4710384028_L: whole blood-Melanoma-Melanoma	4710384028_L	whole blood	Melanoma
4710384029_E	Melanoma	GSM2672556	GSE100158	4710384029_E: whole blood-Melanoma-Melanoma	4710384029_E	whole blood	Melanoma
4710384030_I	Melanoma	GSM2672535	GSE100158	4710384030_I: whole blood-Melanoma-Melanoma	4710384030_I	whole blood	Melanoma
4710384034_G	Melanoma	GSM2672550	GSE100158	4710384034_G: whole blood-Melanoma-Melanoma	4710384034_G	whole blood	Melanoma
4710384040_L	Melanoma	GSM2672549	GSE100158	4710384040_L: whole blood-Melanoma-Melanoma	4710384040_L	whole blood	Melanoma
4710384035_E	Melanoma	GSM2672544	GSE100158	4710384035_E: whole blood-Melanoma-Melanoma	4710384035_E	whole blood	Melanoma
4710384022_A	Melanoma	GSM2672552	GSE100158	4710384022_A: whole blood-Melanoma-Melanoma	4710384022_A	whole blood	Melanoma
4710384022_B	Melanoma	GSM2672546	GSE100158	4710384022_B: whole blood-Melanoma-Melanoma	4710384022_B	whole blood	Melanoma
4710384041_F	Melanoma	GSM2672543	GSE100158	4710384041_F: whole blood-Melanoma-Melanoma	4710384041_F	whole blood	Melanoma
4710384041_G	Melanoma	GSM2672536	GSE100158	4710384041_G: whole blood-Melanoma-Melanoma	4710384041_G	whole blood	Melanoma
4710384022_D	Melanoma	GSM2672540	GSE100158	4710384022_D: whole blood-Melanoma-Melanoma	4710384022_D	whole blood	Melanoma
4710384041_H	Melanoma	GSM2672551	GSE100158	4710384041_H: whole blood-Melanoma-Melanoma	4710384041_H	whole blood	Melanoma
4710384022_H	Melanoma	GSM2672555	GSE100158	4710384022_H: whole blood-Melanoma-Melanoma	4710384022_H	whole blood	Melanoma
4710384022_I	Melanoma	GSM2672548	GSE100158	4710384022_I: whole blood-Melanoma-Melanoma	4710384022_I	whole blood	Melanoma
4710384022_K	Control	GSM2672531	GSE100158	4710384022_K: whole blood-Melanoma-Control	4710384022_K	whole blood	Melanoma
4710384042_C	Melanoma	GSM2672545	GSE100158	4710384042_C: whole blood-Melanoma-Melanoma	4710384042_C	whole blood	Melanoma
4710384022_L	Control	GSM2672530	GSE100158	4710384022_L: whole blood-Melanoma-Control	4710384022_L	whole blood	Melanoma
4710384036_H	Melanoma	GSM2672537	GSE100158	4710384036_H: whole blood-Melanoma-Melanoma	4710384036_H	whole blood	Melanoma
4710384024_A	Control	GSM2672534	GSE100158	4710384024_A: whole blood-Melanoma-Control	4710384024_A	whole blood	Melanoma
4710384024_B	Control	GSM2672532	GSE100158	4710384024_B: whole blood-Melanoma-Control	4710384024_B	whole blood	Melanoma
4710384042_L	Melanoma	GSM2672539	GSE100158	4710384042_L: whole blood-Melanoma-Melanoma	4710384042_L	whole blood	Melanoma

Group Sets View in Gene Expression Browser

Name
All Samples		View
Illness	Default	View
In order to make new Group Sets or change settings, please log in.

Module Analysis

Group Set
All Samples
Illness

SIDRA