Sample Set Annotation Tool: A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (RSV Datasets)-GSE100161

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Development of a cost-effective and practical targeted transcriptional fingerprinting assay (TFA) for monitoring a diverse repertoire of immune responses identified in the human blood transcriptome relying on a modular transcriptional repertoire built on the basis of variations in transcript abundance measured on a genome wide scale in the blood of nearly 1000 subjects across 16 immunologic conditions.

Hypothesis

Experimental Design

Experimental Variables

Controls

Methods

RNA was extracted with MagMAX™ RNA Isolation Kit

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE100161

Expected Samples:

84 Samples Loaded: 84

Species

Human (Homo sapiens)

Sample Source

Whole Blood

Disease

RSV

Treatment Protocol

Growth Protocol

Extraction Protocol

RNA was extracted with MagMAX™ RNA Isolation Kit

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	Illness	GEOsampleID	GEOID	originalBRI	BRIsampleID
4457260009_A	RSV	GSM2672687	GSE100161	4457260009_A: whole blood-RSV-RSV	4457260009_A
4457260009_B	RSV	GSM2672665	GSE100161	4457260009_B: whole blood-RSV-RSV	4457260009_B
4457260009_C	RSV	GSM2672710	GSE100161	4457260009_C: whole blood-RSV-RSV	4457260009_C
4457260009_F	Control	GSM2672725	GSE100161	4457260009_F: whole blood-RSV-Control	4457260009_F
4457260010_A	Control	GSM2672719	GSE100161	4457260010_A: whole blood-RSV-Control	4457260010_A

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File
GSE100161_Sample_annotaion-whole blood-RSV.csv Sample Set Spreadsheet

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	Illness	GEOsampleID	GEOID	OriginalBRI	BRIsampleID	Source	Dataset
4457260029_E	RSV	GSM2672658	GSE100161	4457260029_E: whole blood-RSV-RSV	4457260029_E	whole blood	RSV
4457260029_F	RSV	GSM2672689	GSE100161	4457260029_F: whole blood-RSV-RSV	4457260029_F	whole blood	RSV
4457260030_A	RSV	GSM2672667	GSE100161	4457260030_A: whole blood-RSV-RSV	4457260030_A	whole blood	RSV
4457260030_B	RSV	GSM2672697	GSE100161	4457260030_B: whole blood-RSV-RSV	4457260030_B	whole blood	RSV
4457260030_D	Control	GSM2672720	GSE100161	4457260030_D: whole blood-RSV-Control	4457260030_D	whole blood	RSV
4457260030_E	RSV	GSM2672675	GSE100161	4457260030_E: whole blood-RSV-RSV	4457260030_E	whole blood	RSV
4457260030_F	RSV	GSM2672653	GSE100161	4457260030_F: whole blood-RSV-RSV	4457260030_F	whole blood	RSV
4457260040_A	RSV	GSM2672683	GSE100161	4457260040_A: whole blood-RSV-RSV	4457260040_A	whole blood	RSV
4457260040_B	RSV	GSM2672661	GSE100161	4457260040_B: whole blood-RSV-RSV	4457260040_B	whole blood	RSV
4457260040_C	RSV	GSM2672691	GSE100161	4457260040_C: whole blood-RSV-RSV	4457260040_C	whole blood	RSV
4457260040_E	Control	GSM2672714	GSE100161	4457260040_E: whole blood-RSV-Control	4457260040_E	whole blood	RSV
4457260040_F	RSV	GSM2672669	GSE100161	4457260040_F: whole blood-RSV-RSV	4457260040_F	whole blood	RSV
4457260050_A	RSV	GSM2672699	GSE100161	4457260050_A: whole blood-RSV-RSV	4457260050_A	whole blood	RSV
4457260050_B	RSV	GSM2672677	GSE100161	4457260050_B: whole blood-RSV-RSV	4457260050_B	whole blood	RSV
4457260050_C	RSV	GSM2672655	GSE100161	4457260050_C: whole blood-RSV-RSV	4457260050_C	whole blood	RSV
4457260050_D	RSV	GSM2672685	GSE100161	4457260050_D: whole blood-RSV-RSV	4457260050_D	whole blood	RSV
4457260050_F	Control	GSM2672722	GSE100161	4457260050_F: whole blood-RSV-Control	4457260050_F	whole blood	RSV
4457260055_A	RSV	GSM2672663	GSE100161	4457260055_A: whole blood-RSV-RSV	4457260055_A	whole blood	RSV
4457260055_B	RSV	GSM2672711	GSE100161	4457260055_B: whole blood-RSV-RSV	4457260055_B	whole blood	RSV
4457260055_C	RSV	GSM2672693	GSE100161	4457260055_C: whole blood-RSV-RSV	4457260055_C	whole blood	RSV
4457260055_D	RSV	GSM2672707	GSE100161	4457260055_D: whole blood-RSV-RSV	4457260055_D	whole blood	RSV
4457260056_B	Control	GSM2672716	GSE100161	4457260056_B: whole blood-RSV-Control	4457260056_B	whole blood	RSV
4457260056_C	RSV	GSM2672671	GSE100161	4457260056_C: whole blood-RSV-RSV	4457260056_C	whole blood	RSV
4457260056_D	RSV	GSM2672643	GSE100161	4457260056_D: whole blood-RSV-RSV	4457260056_D	whole blood	RSV
4457260056_E	RSV	GSM2672701	GSE100161	4457260056_E: whole blood-RSV-RSV	4457260056_E	whole blood	RSV
4457260056_F	RSV	GSM2672648	GSE100161	4457260056_F: whole blood-RSV-RSV	4457260056_F	whole blood	RSV
4457260074_A	RSV	GSM2672679	GSE100161	4457260074_A: whole blood-RSV-RSV	4457260074_A	whole blood	RSV
4457260074_B	RSV	GSM2672645	GSE100161	4457260074_B: whole blood-RSV-RSV	4457260074_B	whole blood	RSV
4457260074_D	Control	GSM2672724	GSE100161	4457260074_D: whole blood-RSV-Control	4457260074_D	whole blood	RSV
4457260074_E	RSV	GSM2672657	GSE100161	4457260074_E: whole blood-RSV-RSV	4457260074_E	whole blood	RSV
4457260074_F	RSV	GSM2672650	GSE100161	4457260074_F: whole blood-RSV-RSV	4457260074_F	whole blood	RSV
4457260088_A	RSV	GSM2672688	GSE100161	4457260088_A: whole blood-RSV-RSV	4457260088_A	whole blood	RSV
4457260088_B	RSV	GSM2672646	GSE100161	4457260088_B: whole blood-RSV-RSV	4457260088_B	whole blood	RSV
4457260088_C	RSV	GSM2672666	GSE100161	4457260088_C: whole blood-RSV-RSV	4457260088_C	whole blood	RSV
4457260088_D	RSV	GSM2672651	GSE100161	4457260088_D: whole blood-RSV-RSV	4457260088_D	whole blood	RSV
4457260088_F	Control	GSM2672718	GSE100161	4457260088_F: whole blood-RSV-Control	4457260088_F	whole blood	RSV
4463361007_C	RSV	GSM2672696	GSE100161	4463361007_C: whole blood-RSV-RSV	4463361007_C	whole blood	RSV
4463361007_D	RSV	GSM2672647	GSE100161	4463361007_D: whole blood-RSV-RSV	4463361007_D	whole blood	RSV
4463361007_E	RSV	GSM2672674	GSE100161	4463361007_E: whole blood-RSV-RSV	4463361007_E	whole blood	RSV
4463361007_F	RSV	GSM2672644	GSE100161	4463361007_F: whole blood-RSV-RSV	4463361007_F	whole blood	RSV
4463361008_A	RSV	GSM2672652	GSE100161	4463361008_A: whole blood-RSV-RSV	4463361008_A	whole blood	RSV
4463361008_B	RSV	GSM2672682	GSE100161	4463361008_B: whole blood-RSV-RSV	4463361008_B	whole blood	RSV
4463361008_E	RSV	GSM2672660	GSE100161	4463361008_E: whole blood-RSV-RSV	4463361008_E	whole blood	RSV
4463361008_F	RSV	GSM2672649	GSE100161	4463361008_F: whole blood-RSV-RSV	4463361008_F	whole blood	RSV
4457260009_A	RSV	GSM2672687	GSE100161	4457260009_A: whole blood-RSV-RSV	4457260009_A	whole blood	RSV
4457260009_B	RSV	GSM2672665	GSE100161	4457260009_B: whole blood-RSV-RSV	4457260009_B	whole blood	RSV
4457260009_C	RSV	GSM2672710	GSE100161	4457260009_C: whole blood-RSV-RSV	4457260009_C	whole blood	RSV
4457260009_F	Control	GSM2672725	GSE100161	4457260009_F: whole blood-RSV-Control	4457260009_F	whole blood	RSV
4457260010_A	Control	GSM2672719	GSE100161	4457260010_A: whole blood-RSV-Control	4457260010_A	whole blood	RSV
4457260010_B	RSV	GSM2672695	GSE100161	4457260010_B: whole blood-RSV-RSV	4457260010_B	whole blood	RSV
4457260010_C	RSV	GSM2672673	GSE100161	4457260010_C: whole blood-RSV-RSV	4457260010_C	whole blood	RSV
4457260010_D	RSV	GSM2672706	GSE100161	4457260010_D: whole blood-RSV-RSV	4457260010_D	whole blood	RSV
4457260011_B	Control	GSM2672713	GSE100161	4457260011_B: whole blood-RSV-Control	4457260011_B	whole blood	RSV
4457260011_C	RSV	GSM2672703	GSE100161	4457260011_C: whole blood-RSV-RSV	4457260011_C	whole blood	RSV
4457260011_D	RSV	GSM2672712	GSE100161	4457260011_D: whole blood-RSV-RSV	4457260011_D	whole blood	RSV
4457260011_E	RSV	GSM2672708	GSE100161	4457260011_E: whole blood-RSV-RSV	4457260011_E	whole blood	RSV
4457260012_C	Control	GSM2672721	GSE100161	4457260012_C: whole blood-RSV-Control	4457260012_C	whole blood	RSV
4457260012_D	RSV	GSM2672681	GSE100161	4457260012_D: whole blood-RSV-RSV	4457260012_D	whole blood	RSV
4457260012_E	RSV	GSM2672659	GSE100161	4457260012_E: whole blood-RSV-RSV	4457260012_E	whole blood	RSV
4457260012_F	RSV	GSM2672704	GSE100161	4457260012_F: whole blood-RSV-RSV	4457260012_F	whole blood	RSV
4457260013_A	RSV	GSM2672690	GSE100161	4457260013_A: whole blood-RSV-RSV	4457260013_A	whole blood	RSV
4457260013_D	Control	GSM2672715	GSE100161	4457260013_D: whole blood-RSV-Control	4457260013_D	whole blood	RSV
4457260013_E	RSV	GSM2672668	GSE100161	4457260013_E: whole blood-RSV-RSV	4457260013_E	whole blood	RSV
4457260013_F	RSV	GSM2672709	GSE100161	4457260013_F: whole blood-RSV-RSV	4457260013_F	whole blood	RSV
4457260016_A	RSV	GSM2672698	GSE100161	4457260016_A: whole blood-RSV-RSV	4457260016_A	whole blood	RSV
4457260016_B	RSV	GSM2672705	GSE100161	4457260016_B: whole blood-RSV-RSV	4457260016_B	whole blood	RSV
4457260016_E	Control	GSM2672723	GSE100161	4457260016_E: whole blood-RSV-Control	4457260016_E	whole blood	RSV
4457260016_F	RSV	GSM2672676	GSE100161	4457260016_F: whole blood-RSV-RSV	4457260016_F	whole blood	RSV
4457260018_A	RSV	GSM2672654	GSE100161	4457260018_A: whole blood-RSV-RSV	4457260018_A	whole blood	RSV
4457260018_B	RSV	GSM2672684	GSE100161	4457260018_B: whole blood-RSV-RSV	4457260018_B	whole blood	RSV
4457260018_C	RSV	GSM2672662	GSE100161	4457260018_C: whole blood-RSV-RSV	4457260018_C	whole blood	RSV
4457260018_D	RSV	GSM2672692	GSE100161	4457260018_D: whole blood-RSV-RSV	4457260018_D	whole blood	RSV
4457260018_F	Control	GSM2672717	GSE100161	4457260018_F: whole blood-RSV-Control	4457260018_F	whole blood	RSV
4457260025_B	RSV	GSM2672670	GSE100161	4457260025_B: whole blood-RSV-RSV	4457260025_B	whole blood	RSV
4457260025_C	RSV	GSM2672700	GSE100161	4457260025_C: whole blood-RSV-RSV	4457260025_C	whole blood	RSV
4457260025_D	RSV	GSM2672678	GSE100161	4457260025_D: whole blood-RSV-RSV	4457260025_D	whole blood	RSV
4457260025_E	RSV	GSM2672656	GSE100161	4457260025_E: whole blood-RSV-RSV	4457260025_E	whole blood	RSV
4457260027_C	RSV	GSM2672686	GSE100161	4457260027_C: whole blood-RSV-RSV	4457260027_C	whole blood	RSV
4457260027_D	RSV	GSM2672664	GSE100161	4457260027_D: whole blood-RSV-RSV	4457260027_D	whole blood	RSV
4457260027_E	RSV	GSM2672694	GSE100161	4457260027_E: whole blood-RSV-RSV	4457260027_E	whole blood	RSV
4457260027_F	RSV	GSM2672672	GSE100161	4457260027_F: whole blood-RSV-RSV	4457260027_F	whole blood	RSV
4457260029_A	RSV	GSM2672702	GSE100161	4457260029_A: whole blood-RSV-RSV	4457260029_A	whole blood	RSV
4457260029_C	Control	GSM2672726	GSE100161	4457260029_C: whole blood-RSV-Control	4457260029_C	whole blood	RSV
4457260029_D	RSV	GSM2672680	GSE100161	4457260029_D: whole blood-RSV-RSV	4457260029_D	whole blood	RSV

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