Sample Set Annotation Tool: A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (MS Datasets)-GSE100162

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Development of a cost-effective and practical targeted transcriptional fingerprinting assay (TFA) for monitoring a diverse repertoire of immune responses identified in the human blood transcriptome relying on a modular transcriptional repertoire built on the basis of variations in transcript abundance measured on a genome wide scale in the blood of nearly 1000 subjects across 16 immunologic conditions.

Hypothesis

Experimental Design

Experimental Variables

Controls

Methods

RNA was extracted with MagMAX™ RNA Isolation Kit

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE100162

Expected Samples:

56 Samples Loaded: 56

Species

Human (Homo sapiens)

Sample Source

Whole Blood

Disease

Treatment Protocol

Growth Protocol

Extraction Protocol

RNA was extracted with MagMAX™ RNA Isolation Kit

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	Illness	GEOsampleID	GEOID	originalBRI	BRIsampleID
4856050012_A	Control	GSM2672727	GSE100162	4856050012_A: whole blood-MS-Control	4856050012_A
4856050012_B	Control	GSM2672728	GSE100162	4856050012_B: whole blood-MS-Control	4856050012_B
4856050012_C	Control	GSM2672729	GSE100162	4856050012_C: whole blood-MS-Control	4856050012_C
4856050012_D	Control	GSM2672730	GSE100162	4856050012_D: whole blood-MS-Control	4856050012_D
4856050012_F	MS Patient	GSM2672749	GSE100162	4856050012_F: whole blood-MS-MS Patient	4856050012_F

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File
GSE100162_Sample_annotaion-whole blood-MS.csv Sample Set Spreadsheet

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	Illness	GEOsampleID	GEOID	OriginalBRI	BRIsampleID	Source	Dataset
4856050012_A	Control	GSM2672727	GSE100162	4856050012_A: whole blood-MS-Control	4856050012_A	whole blood	MS
4856050012_B	Control	GSM2672728	GSE100162	4856050012_B: whole blood-MS-Control	4856050012_B	whole blood	MS
4856050012_C	Control	GSM2672729	GSE100162	4856050012_C: whole blood-MS-Control	4856050012_C	whole blood	MS
4856050012_D	Control	GSM2672730	GSE100162	4856050012_D: whole blood-MS-Control	4856050012_D	whole blood	MS
4856050012_F	MS Patient	GSM2672749	GSE100162	4856050012_F: whole blood-MS-MS Patient	4856050012_F	whole blood	MS
4856050012_G	MS Patient	GSM2672750	GSE100162	4856050012_G: whole blood-MS-MS Patient	4856050012_G	whole blood	MS
4856050012_H	MS Patient	GSM2672751	GSE100162	4856050012_H: whole blood-MS-MS Patient	4856050012_H	whole blood	MS
4856050012_I	MS Patient	GSM2672752	GSE100162	4856050012_I: whole blood-MS-MS Patient	4856050012_I	whole blood	MS
4856050012_J	MS Patient	GSM2672753	GSE100162	4856050012_J: whole blood-MS-MS Patient	4856050012_J	whole blood	MS
4856050012_K	MS Patient	GSM2672754	GSE100162	4856050012_K: whole blood-MS-MS Patient	4856050012_K	whole blood	MS
4856050012_L	MS Patient	GSM2672755	GSE100162	4856050012_L: whole blood-MS-MS Patient	4856050012_L	whole blood	MS
4856050022_A	MS Patient	GSM2672756	GSE100162	4856050022_A: whole blood-MS-MS Patient	4856050022_A	whole blood	MS
4856050022_B	MS Patient	GSM2672757	GSE100162	4856050022_B: whole blood-MS-MS Patient	4856050022_B	whole blood	MS
4856050022_D	MS Patient	GSM2672758	GSE100162	4856050022_D: whole blood-MS-MS Patient	4856050022_D	whole blood	MS
4856050022_E	Control	GSM2672731	GSE100162	4856050022_E: whole blood-MS-Control	4856050022_E	whole blood	MS
4856050022_F	Control	GSM2672732	GSE100162	4856050022_F: whole blood-MS-Control	4856050022_F	whole blood	MS
4856050022_G	Control	GSM2672733	GSE100162	4856050022_G: whole blood-MS-Control	4856050022_G	whole blood	MS
4856050022_H	Control	GSM2672734	GSE100162	4856050022_H: whole blood-MS-Control	4856050022_H	whole blood	MS
4856050022_J	MS Patient	GSM2672759	GSE100162	4856050022_J: whole blood-MS-MS Patient	4856050022_J	whole blood	MS
4856050022_K	MS Patient	GSM2672760	GSE100162	4856050022_K: whole blood-MS-MS Patient	4856050022_K	whole blood	MS
4856050022_L	MS Patient	GSM2672761	GSE100162	4856050022_L: whole blood-MS-MS Patient	4856050022_L	whole blood	MS
4856050023_A	MS Patient	GSM2672762	GSE100162	4856050023_A: whole blood-MS-MS Patient	4856050023_A	whole blood	MS
4856050023_B	MS Patient	GSM2672763	GSE100162	4856050023_B: whole blood-MS-MS Patient	4856050023_B	whole blood	MS
4856050023_D	MS Patient	GSM2672764	GSE100162	4856050023_D: whole blood-MS-MS Patient	4856050023_D	whole blood	MS
4856050023_G	MS Patient	GSM2672765	GSE100162	4856050023_G: whole blood-MS-MS Patient	4856050023_G	whole blood	MS
4856050023_H	MS Patient	GSM2672766	GSE100162	4856050023_H: whole blood-MS-MS Patient	4856050023_H	whole blood	MS
4856050023_I	Control	GSM2672735	GSE100162	4856050023_I: whole blood-MS-Control	4856050023_I	whole blood	MS
4856050023_J	Control	GSM2672736	GSE100162	4856050023_J: whole blood-MS-Control	4856050023_J	whole blood	MS
4856050023_K	Control	GSM2672737	GSE100162	4856050023_K: whole blood-MS-Control	4856050023_K	whole blood	MS
4856050023_L	Control	GSM2672738	GSE100162	4856050023_L: whole blood-MS-Control	4856050023_L	whole blood	MS
4856050029_A	Control	GSM2672739	GSE100162	4856050029_A: whole blood-MS-Control	4856050029_A	whole blood	MS
4856050029_B	Control	GSM2672740	GSE100162	4856050029_B: whole blood-MS-Control	4856050029_B	whole blood	MS
4856050029_C	Control	GSM2672741	GSE100162	4856050029_C: whole blood-MS-Control	4856050029_C	whole blood	MS
4856050029_D	Control	GSM2672742	GSE100162	4856050029_D: whole blood-MS-Control	4856050029_D	whole blood	MS
4856050029_E	MS Patient	GSM2672767	GSE100162	4856050029_E: whole blood-MS-MS Patient	4856050029_E	whole blood	MS
4856050029_F	MS Patient	GSM2672768	GSE100162	4856050029_F: whole blood-MS-MS Patient	4856050029_F	whole blood	MS
4856050029_G	MS Patient	GSM2672769	GSE100162	4856050029_G: whole blood-MS-MS Patient	4856050029_G	whole blood	MS
4856050029_I	MS Patient	GSM2672770	GSE100162	4856050029_I: whole blood-MS-MS Patient	4856050029_I	whole blood	MS
4856050029_J	MS Patient	GSM2672771	GSE100162	4856050029_J: whole blood-MS-MS Patient	4856050029_J	whole blood	MS
4856050029_K	MS Patient	GSM2672772	GSE100162	4856050029_K: whole blood-MS-MS Patient	4856050029_K	whole blood	MS
4856050029_L	MS Patient	GSM2672773	GSE100162	4856050029_L: whole blood-MS-MS Patient	4856050029_L	whole blood	MS
4856050033_A	MS Patient	GSM2672774	GSE100162	4856050033_A: whole blood-MS-MS Patient	4856050033_A	whole blood	MS
4856050033_B	MS Patient	GSM2672775	GSE100162	4856050033_B: whole blood-MS-MS Patient	4856050033_B	whole blood	MS
4856050033_C	MS Patient	GSM2672776	GSE100162	4856050033_C: whole blood-MS-MS Patient	4856050033_C	whole blood	MS
4856050033_D	MS Patient	GSM2672777	GSE100162	4856050033_D: whole blood-MS-MS Patient	4856050033_D	whole blood	MS
4856050033_E	Control	GSM2672743	GSE100162	4856050033_E: whole blood-MS-Control	4856050033_E	whole blood	MS
4856050033_F	Control	GSM2672744	GSE100162	4856050033_F: whole blood-MS-Control	4856050033_F	whole blood	MS
4856050033_G	Control	GSM2672745	GSE100162	4856050033_G: whole blood-MS-Control	4856050033_G	whole blood	MS
4856050033_H	Control	GSM2672746	GSE100162	4856050033_H: whole blood-MS-Control	4856050033_H	whole blood	MS
4856050033_J	MS Patient	GSM2672778	GSE100162	4856050033_J: whole blood-MS-MS Patient	4856050033_J	whole blood	MS
4856050033_K	MS Patient	GSM2672779	GSE100162	4856050033_K: whole blood-MS-MS Patient	4856050033_K	whole blood	MS
4856050033_L	MS Patient	GSM2672780	GSE100162	4856050033_L: whole blood-MS-MS Patient	4856050033_L	whole blood	MS
4856050037_A	MS Patient	GSM2672781	GSE100162	4856050037_A: whole blood-MS-MS Patient	4856050037_A	whole blood	MS
4856050037_C	Control	GSM2672747	GSE100162	4856050037_C: whole blood-MS-Control	4856050037_C	whole blood	MS
4856050037_D	Control	GSM2672748	GSE100162	4856050037_D: whole blood-MS-Control	4856050037_D	whole blood	MS
4856050037_E	MS Patient	GSM2672782	GSE100162	4856050037_E: whole blood-MS-MS Patient	4856050037_E	whole blood	MS

Group Sets View in Gene Expression Browser

Name
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Module Analysis

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SIDRA