Sample Set Annotation Tool: A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (SLE Datasets)-GSE100163

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Development of a cost-effective and practical targeted transcriptional fingerprinting assay (TFA) for monitoring a diverse repertoire of immune responses identified in the human blood transcriptome relying on a modular transcriptional repertoire built on the basis of variations in transcript abundance measured on a genome wide scale in the blood of nearly 1000 subjects across 16 immunologic conditions.

Hypothesis

Experimental Design

Experimental Variables

Controls

Methods

RNA was extracted with MagMAX™ RNA Isolation Kit

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE100163

Expected Samples:

69 Samples Loaded: 69

Species

Human (Homo sapiens)

Sample Source

Whole Blood

Disease

Pediatric SLE

Treatment Protocol

Growth Protocol

Extraction Protocol

RNA was extracted with MagMAX™ RNA Isolation Kit

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	Illness	GEOsampleID	GEOID	originalBRI	BRIsampleID
4856050050_A	SLE	GSM2672836	GSE100163	4856050050_A: whole blood-SLE-SLE	4856050050_A
4856050050_B	SLE	GSM2672815	GSE100163	4856050050_B: whole blood-SLE-SLE	4856050050_B
4856050050_C	SLE	GSM2672807	GSE100163	4856050050_C: whole blood-SLE-SLE	4856050050_C
4856050050_D	SLE	GSM2672822	GSE100163	4856050050_D: whole blood-SLE-SLE	4856050050_D
4856050050_E	SLE	GSM2672835	GSE100163	4856050050_E: whole blood-SLE-SLE	4856050050_E

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File
GSE100163_Sample_annotaion-whole blood-SLE.csv Sample Set Spreadsheet

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	Illness	GEOsampleID	GEOID	OriginalBRI	BRIsampleID	Source	Dataset
4856050050_A	SLE	GSM2672836	GSE100163	4856050050_A: whole blood-SLE-SLE	4856050050_A	whole blood	SLE
4856050050_B	SLE	GSM2672815	GSE100163	4856050050_B: whole blood-SLE-SLE	4856050050_B	whole blood	SLE
4856050050_C	SLE	GSM2672807	GSE100163	4856050050_C: whole blood-SLE-SLE	4856050050_C	whole blood	SLE
4856050050_D	SLE	GSM2672822	GSE100163	4856050050_D: whole blood-SLE-SLE	4856050050_D	whole blood	SLE
4856050050_E	SLE	GSM2672835	GSE100163	4856050050_E: whole blood-SLE-SLE	4856050050_E	whole blood	SLE
4856050050_F	SLE	GSM2672829	GSE100163	4856050050_F: whole blood-SLE-SLE	4856050050_F	whole blood	SLE
4856050050_G	SLE	GSM2672800	GSE100163	4856050050_G: whole blood-SLE-SLE	4856050050_G	whole blood	SLE
4856050050_H	SLE	GSM2672798	GSE100163	4856050050_H: whole blood-SLE-SLE	4856050050_H	whole blood	SLE
4856050050_I	Control	GSM2672796	GSE100163	4856050050_I: whole blood-SLE-Control	4856050050_I	whole blood	SLE
4856050050_J	Control	GSM2672789	GSE100163	4856050050_J: whole blood-SLE-Control	4856050050_J	whole blood	SLE
4856050050_K	SLE	GSM2672801	GSE100163	4856050050_K: whole blood-SLE-SLE	4856050050_K	whole blood	SLE
4856050050_L	Control	GSM2672795	GSE100163	4856050050_L: whole blood-SLE-Control	4856050050_L	whole blood	SLE
4856050051_A	SLE	GSM2672844	GSE100163	4856050051_A: whole blood-SLE-SLE	4856050051_A	whole blood	SLE
4856050051_B	SLE	GSM2672799	GSE100163	4856050051_B: whole blood-SLE-SLE	4856050051_B	whole blood	SLE
4856050051_C	SLE	GSM2672845	GSE100163	4856050051_C: whole blood-SLE-SLE	4856050051_C	whole blood	SLE
4856050051_D	SLE	GSM2672806	GSE100163	4856050051_D: whole blood-SLE-SLE	4856050051_D	whole blood	SLE
4856050051_E	SLE	GSM2672847	GSE100163	4856050051_E: whole blood-SLE-SLE	4856050051_E	whole blood	SLE
4856050051_F	SLE	GSM2672802	GSE100163	4856050051_F: whole blood-SLE-SLE	4856050051_F	whole blood	SLE
4856050051_G	Control	GSM2672786	GSE100163	4856050051_G: whole blood-SLE-Control	4856050051_G	whole blood	SLE
4856050051_H	Control	GSM2672787	GSE100163	4856050051_H: whole blood-SLE-Control	4856050051_H	whole blood	SLE
4856050051_I	Control	GSM2672788	GSE100163	4856050051_I: whole blood-SLE-Control	4856050051_I	whole blood	SLE
4856050051_J	SLE	GSM2672840	GSE100163	4856050051_J: whole blood-SLE-SLE	4856050051_J	whole blood	SLE
4856050051_K	SLE	GSM2672819	GSE100163	4856050051_K: whole blood-SLE-SLE	4856050051_K	whole blood	SLE
4856050051_L	SLE	GSM2672851	GSE100163	4856050051_L: whole blood-SLE-SLE	4856050051_L	whole blood	SLE
4856050053_A	SLE	GSM2672841	GSE100163	4856050053_A: whole blood-SLE-SLE	4856050053_A	whole blood	SLE
4856050053_B	SLE	GSM2672797	GSE100163	4856050053_B: whole blood-SLE-SLE	4856050053_B	whole blood	SLE
4856050053_C	SLE	GSM2672823	GSE100163	4856050053_C: whole blood-SLE-SLE	4856050053_C	whole blood	SLE
4856050053_D	Control	GSM2672785	GSE100163	4856050053_D: whole blood-SLE-Control	4856050053_D	whole blood	SLE
4856050053_E	Control	GSM2672783	GSE100163	4856050053_E: whole blood-SLE-Control	4856050053_E	whole blood	SLE
4856050053_F	Control	GSM2672790	GSE100163	4856050053_F: whole blood-SLE-Control	4856050053_F	whole blood	SLE
4856050053_G	SLE	GSM2672849	GSE100163	4856050053_G: whole blood-SLE-SLE	4856050053_G	whole blood	SLE
4856050053_H	SLE	GSM2672828	GSE100163	4856050053_H: whole blood-SLE-SLE	4856050053_H	whole blood	SLE
4856050053_I	SLE	GSM2672842	GSE100163	4856050053_I: whole blood-SLE-SLE	4856050053_I	whole blood	SLE
4856050053_J	SLE	GSM2672843	GSE100163	4856050053_J: whole blood-SLE-SLE	4856050053_J	whole blood	SLE
4856050053_K	SLE	GSM2672850	GSE100163	4856050053_K: whole blood-SLE-SLE	4856050053_K	whole blood	SLE
4856050053_L	SLE	GSM2672824	GSE100163	4856050053_L: whole blood-SLE-SLE	4856050053_L	whole blood	SLE
4856076024_A	Control	GSM2672784	GSE100163	4856076024_A: whole blood-SLE-Control	4856076024_A	whole blood	SLE
4856076024_D	SLE	GSM2672848	GSE100163	4856076024_D: whole blood-SLE-SLE	4856076024_D	whole blood	SLE
4856076024_E	SLE	GSM2672818	GSE100163	4856076024_E: whole blood-SLE-SLE	4856076024_E	whole blood	SLE
4856076024_F	SLE	GSM2672846	GSE100163	4856076024_F: whole blood-SLE-SLE	4856076024_F	whole blood	SLE
4856076024_G	SLE	GSM2672810	GSE100163	4856076024_G: whole blood-SLE-SLE	4856076024_G	whole blood	SLE
4856076024_H	SLE	GSM2672837	GSE100163	4856076024_H: whole blood-SLE-SLE	4856076024_H	whole blood	SLE
4856076024_I	SLE	GSM2672804	GSE100163	4856076024_I: whole blood-SLE-SLE	4856076024_I	whole blood	SLE
4856076024_J	SLE	GSM2672839	GSE100163	4856076024_J: whole blood-SLE-SLE	4856076024_J	whole blood	SLE
4856076024_K	SLE	GSM2672820	GSE100163	4856076024_K: whole blood-SLE-SLE	4856076024_K	whole blood	SLE
4856076024_L	SLE	GSM2672821	GSE100163	4856076024_L: whole blood-SLE-SLE	4856076024_L	whole blood	SLE
4856076044_A	SLE	GSM2672811	GSE100163	4856076044_A: whole blood-SLE-SLE	4856076044_A	whole blood	SLE
4856076044_B	SLE	GSM2672814	GSE100163	4856076044_B: whole blood-SLE-SLE	4856076044_B	whole blood	SLE
4856076044_C	SLE	GSM2672813	GSE100163	4856076044_C: whole blood-SLE-SLE	4856076044_C	whole blood	SLE
4856076044_D	SLE	GSM2672816	GSE100163	4856076044_D: whole blood-SLE-SLE	4856076044_D	whole blood	SLE
4856076044_E	SLE	GSM2672808	GSE100163	4856076044_E: whole blood-SLE-SLE	4856076044_E	whole blood	SLE
4856076044_F	SLE	GSM2672817	GSE100163	4856076044_F: whole blood-SLE-SLE	4856076044_F	whole blood	SLE
4856076044_G	SLE	GSM2672834	GSE100163	4856076044_G: whole blood-SLE-SLE	4856076044_G	whole blood	SLE
4856076044_H	Control	GSM2672793	GSE100163	4856076044_H: whole blood-SLE-Control	4856076044_H	whole blood	SLE
4856076044_I	Control	GSM2672791	GSE100163	4856076044_I: whole blood-SLE-Control	4856076044_I	whole blood	SLE
4856076044_J	SLE	GSM2672805	GSE100163	4856076044_J: whole blood-SLE-SLE	4856076044_J	whole blood	SLE
4856076044_K	SLE	GSM2672833	GSE100163	4856076044_K: whole blood-SLE-SLE	4856076044_K	whole blood	SLE
4856076044_L	Control	GSM2672794	GSE100163	4856076044_L: whole blood-SLE-Control	4856076044_L	whole blood	SLE
4856076053_A	SLE	GSM2672826	GSE100163	4856076053_A: whole blood-SLE-SLE	4856076053_A	whole blood	SLE
4856076053_B	SLE	GSM2672832	GSE100163	4856076053_B: whole blood-SLE-SLE	4856076053_B	whole blood	SLE
4856076053_C	SLE	GSM2672830	GSE100163	4856076053_C: whole blood-SLE-SLE	4856076053_C	whole blood	SLE
4856076053_D	SLE	GSM2672803	GSE100163	4856076053_D: whole blood-SLE-SLE	4856076053_D	whole blood	SLE
4856076053_E	Control	GSM2672792	GSE100163	4856076053_E: whole blood-SLE-Control	4856076053_E	whole blood	SLE
4856076053_F	SLE	GSM2672831	GSE100163	4856076053_F: whole blood-SLE-SLE	4856076053_F	whole blood	SLE
4856076053_G	SLE	GSM2672825	GSE100163	4856076053_G: whole blood-SLE-SLE	4856076053_G	whole blood	SLE
4856076053_H	SLE	GSM2672838	GSE100163	4856076053_H: whole blood-SLE-SLE	4856076053_H	whole blood	SLE
4856076053_I	SLE	GSM2672827	GSE100163	4856076053_I: whole blood-SLE-SLE	4856076053_I	whole blood	SLE
4856076053_J	SLE	GSM2672812	GSE100163	4856076053_J: whole blood-SLE-SLE	4856076053_J	whole blood	SLE
4856076053_K	SLE	GSM2672809	GSE100163	4856076053_K: whole blood-SLE-SLE	4856076053_K	whole blood	SLE

Group Sets View in Gene Expression Browser

Name
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Module Analysis

Group Set
All Samples
Illness

SIDRA