Sample Set Annotation Tool: A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (SoJIA Datasets)-GSE100164

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Development of a cost-effective and practical targeted transcriptional fingerprinting assay (TFA) for monitoring a diverse repertoire of immune responses identified in the human blood transcriptome relying on a modular transcriptional repertoire built on the basis of variations in transcript abundance measured on a genome wide scale in the blood of nearly 1000 subjects across 16 immunologic conditions.

Hypothesis

Experimental Design

Experimental Variables

Controls

Methods

RNA was extracted with MagMAX™ RNA Isolation Kit

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE100164

Expected Samples:

85 Samples Loaded: 85

Species

Human (Homo sapiens)

Sample Source

Whole Blood

Disease

SoJIA

Treatment Protocol

Growth Protocol

Extraction Protocol

RNA was extracted with MagMAX™ RNA Isolation Kit

Storage Conditions

Sample Set Spreadsheet

Please log in in order to upload files.

Samples Preview

Sample ID	Illness	GEOsampleID	GEOID	originalBRI	BRIsampleID
4433719012_C	SoJIA	GSM2672910	GSE100164	4433719012_C: whole blood-SoJIA-SoJIA	4433719012_C
4447846119_A	SoJIA	GSM2672855	GSE100164	4447846119_A: whole blood-SoJIA-SoJIA	4447846119_A
4447846119_B	SoJIA	GSM2672898	GSE100164	4447846119_B: whole blood-SoJIA-SoJIA	4447846119_B
4447846119_C	SoJIA	GSM2672880	GSE100164	4447846119_C: whole blood-SoJIA-SoJIA	4447846119_C
4447846119_D	Control	GSM2672929	GSE100164	4447846119_D: whole blood-SoJIA-Control	4447846119_D

Please log in in order to upload files.

File
GSE100164_Sample_annotaion-whole blood-SoJIA.csv Sample Set Spreadsheet

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	Illness	GEOsampleID	GEOID	OriginalBRI	BRIsampleID	Source	Dataset
4447846338_H	SoJIA	GSM2672885	GSE100164	4447846338_H: whole blood-SoJIA-SoJIA	4447846338_H	whole blood	SoJIA
4447846338_I	SoJIA	GSM2672867	GSE100164	4447846338_I: whole blood-SoJIA-SoJIA	4447846338_I	whole blood	SoJIA
4447846338_J	Control	GSM2672917	GSE100164	4447846338_J: whole blood-SoJIA-Control	4447846338_J	whole blood	SoJIA
4447846292_F	Control	GSM2672935	GSE100164	4447846292_F: whole blood-SoJIA-Control	4447846292_F	whole blood	SoJIA
4447846292_J	Control	GSM2672928	GSE100164	4447846292_J: whole blood-SoJIA-Control	4447846292_J	whole blood	SoJIA
4447846303_C	Control	GSM2672921	GSE100164	4447846303_C: whole blood-SoJIA-Control	4447846303_C	whole blood	SoJIA
4447846303_F	Control	GSM2672914	GSE100164	4447846303_F: whole blood-SoJIA-Control	4447846303_F	whole blood	SoJIA
4433719012_C	SoJIA	GSM2672910	GSE100164	4433719012_C: whole blood-SoJIA-SoJIA	4433719012_C	whole blood	SoJIA
4447846308_F	SoJIA	GSM2672901	GSE100164	4447846308_F: whole blood-SoJIA-SoJIA	4447846308_F	whole blood	SoJIA
4447846308_G	SoJIA	GSM2672883	GSE100164	4447846308_G: whole blood-SoJIA-SoJIA	4447846308_G	whole blood	SoJIA
4447846119_A	SoJIA	GSM2672855	GSE100164	4447846119_A: whole blood-SoJIA-SoJIA	4447846119_A	whole blood	SoJIA
4447846119_B	SoJIA	GSM2672898	GSE100164	4447846119_B: whole blood-SoJIA-SoJIA	4447846119_B	whole blood	SoJIA
4447846308_J	Control	GSM2672931	GSE100164	4447846308_J: whole blood-SoJIA-Control	4447846308_J	whole blood	SoJIA
4447846119_C	SoJIA	GSM2672880	GSE100164	4447846119_C: whole blood-SoJIA-SoJIA	4447846119_C	whole blood	SoJIA
4447846119_D	Control	GSM2672929	GSE100164	4447846119_D: whole blood-SoJIA-Control	4447846119_D	whole blood	SoJIA
4447846119_E	SoJIA	GSM2672862	GSE100164	4447846119_E: whole blood-SoJIA-SoJIA	4447846119_E	whole blood	SoJIA
4447846119_F	SoJIA	GSM2672905	GSE100164	4447846119_F: whole blood-SoJIA-SoJIA	4447846119_F	whole blood	SoJIA
4447846119_G	SoJIA	GSM2672887	GSE100164	4447846119_G: whole blood-SoJIA-SoJIA	4447846119_G	whole blood	SoJIA
4447846119_H	Control	GSM2672922	GSE100164	4447846119_H: whole blood-SoJIA-Control	4447846119_H	whole blood	SoJIA
4447846119_I	SoJIA	GSM2672869	GSE100164	4447846119_I: whole blood-SoJIA-SoJIA	4447846119_I	whole blood	SoJIA
4447846119_J	SoJIA	GSM2672912	GSE100164	4447846119_J: whole blood-SoJIA-SoJIA	4447846119_J	whole blood	SoJIA
4447846408_B	SoJIA	GSM2672865	GSE100164	4447846408_B: whole blood-SoJIA-SoJIA	4447846408_B	whole blood	SoJIA
4447846119_K	SoJIA	GSM2672893	GSE100164	4447846119_K: whole blood-SoJIA-SoJIA	4447846119_K	whole blood	SoJIA
4447846408_C	SoJIA	GSM2672908	GSE100164	4447846408_C: whole blood-SoJIA-SoJIA	4447846408_C	whole blood	SoJIA
4447846119_L	Control	GSM2672915	GSE100164	4447846119_L: whole blood-SoJIA-Control	4447846119_L	whole blood	SoJIA
4447846173_A	SoJIA	GSM2672875	GSE100164	4447846173_A: whole blood-SoJIA-SoJIA	4447846173_A	whole blood	SoJIA
4447846173_B	SoJIA	GSM2672857	GSE100164	4447846173_B: whole blood-SoJIA-SoJIA	4447846173_B	whole blood	SoJIA
4447846173_C	SoJIA	GSM2672900	GSE100164	4447846173_C: whole blood-SoJIA-SoJIA	4447846173_C	whole blood	SoJIA
4447846173_D	SoJIA	GSM2672882	GSE100164	4447846173_D: whole blood-SoJIA-SoJIA	4447846173_D	whole blood	SoJIA
4447846173_E	SoJIA	GSM2672864	GSE100164	4447846173_E: whole blood-SoJIA-SoJIA	4447846173_E	whole blood	SoJIA
4447846173_F	Control	GSM2672932	GSE100164	4447846173_F: whole blood-SoJIA-Control	4447846173_F	whole blood	SoJIA
4447846173_G	SoJIA	GSM2672907	GSE100164	4447846173_G: whole blood-SoJIA-SoJIA	4447846173_G	whole blood	SoJIA
4447846173_H	Control	GSM2672925	GSE100164	4447846173_H: whole blood-SoJIA-Control	4447846173_H	whole blood	SoJIA
4447846173_I	SoJIA	GSM2672889	GSE100164	4447846173_I: whole blood-SoJIA-SoJIA	4447846173_I	whole blood	SoJIA
4447846173_J	SoJIA	GSM2672871	GSE100164	4447846173_J: whole blood-SoJIA-SoJIA	4447846173_J	whole blood	SoJIA
4447846173_K	SoJIA	GSM2672852	GSE100164	4447846173_K: whole blood-SoJIA-SoJIA	4447846173_K	whole blood	SoJIA
4447846173_L	Control	GSM2672918	GSE100164	4447846173_L: whole blood-SoJIA-Control	4447846173_L	whole blood	SoJIA
4447846174_A	SoJIA	GSM2672895	GSE100164	4447846174_A: whole blood-SoJIA-SoJIA	4447846174_A	whole blood	SoJIA
4447846174_B	SoJIA	GSM2672877	GSE100164	4447846174_B: whole blood-SoJIA-SoJIA	4447846174_B	whole blood	SoJIA
4447846174_C	SoJIA	GSM2672859	GSE100164	4447846174_C: whole blood-SoJIA-SoJIA	4447846174_C	whole blood	SoJIA
4447846174_D	Control	GSM2672934	GSE100164	4447846174_D: whole blood-SoJIA-Control	4447846174_D	whole blood	SoJIA
4447846174_E	SoJIA	GSM2672902	GSE100164	4447846174_E: whole blood-SoJIA-SoJIA	4447846174_E	whole blood	SoJIA
4447846174_F	SoJIA	GSM2672884	GSE100164	4447846174_F: whole blood-SoJIA-SoJIA	4447846174_F	whole blood	SoJIA
4447846174_G	SoJIA	GSM2672866	GSE100164	4447846174_G: whole blood-SoJIA-SoJIA	4447846174_G	whole blood	SoJIA
4447846174_H	Control	GSM2672927	GSE100164	4447846174_H: whole blood-SoJIA-Control	4447846174_H	whole blood	SoJIA
4447846174_I	SoJIA	GSM2672909	GSE100164	4447846174_I: whole blood-SoJIA-SoJIA	4447846174_I	whole blood	SoJIA
4447846174_J	SoJIA	GSM2672891	GSE100164	4447846174_J: whole blood-SoJIA-SoJIA	4447846174_J	whole blood	SoJIA
4447846174_K	SoJIA	GSM2672873	GSE100164	4447846174_K: whole blood-SoJIA-SoJIA	4447846174_K	whole blood	SoJIA
4447846174_L	Control	GSM2672920	GSE100164	4447846174_L: whole blood-SoJIA-Control	4447846174_L	whole blood	SoJIA
4447846175_A	SoJIA	GSM2672854	GSE100164	4447846175_A: whole blood-SoJIA-SoJIA	4447846175_A	whole blood	SoJIA
4447846175_B	SoJIA	GSM2672897	GSE100164	4447846175_B: whole blood-SoJIA-SoJIA	4447846175_B	whole blood	SoJIA
4447846175_C	SoJIA	GSM2672879	GSE100164	4447846175_C: whole blood-SoJIA-SoJIA	4447846175_C	whole blood	SoJIA
4447846175_D	Control	GSM2672936	GSE100164	4447846175_D: whole blood-SoJIA-Control	4447846175_D	whole blood	SoJIA
4447846175_E	SoJIA	GSM2672861	GSE100164	4447846175_E: whole blood-SoJIA-SoJIA	4447846175_E	whole blood	SoJIA
4447846175_F	SoJIA	GSM2672904	GSE100164	4447846175_F: whole blood-SoJIA-SoJIA	4447846175_F	whole blood	SoJIA
4447846175_G	SoJIA	GSM2672886	GSE100164	4447846175_G: whole blood-SoJIA-SoJIA	4447846175_G	whole blood	SoJIA
4447846175_H	Control	GSM2672930	GSE100164	4447846175_H: whole blood-SoJIA-Control	4447846175_H	whole blood	SoJIA
4447846175_I	SoJIA	GSM2672868	GSE100164	4447846175_I: whole blood-SoJIA-SoJIA	4447846175_I	whole blood	SoJIA
4447846175_J	SoJIA	GSM2672911	GSE100164	4447846175_J: whole blood-SoJIA-SoJIA	4447846175_J	whole blood	SoJIA
4447846287_A	SoJIA	GSM2672892	GSE100164	4447846287_A: whole blood-SoJIA-SoJIA	4447846287_A	whole blood	SoJIA
4447846287_C	SoJIA	GSM2672874	GSE100164	4447846287_C: whole blood-SoJIA-SoJIA	4447846287_C	whole blood	SoJIA
4447846287_D	SoJIA	GSM2672856	GSE100164	4447846287_D: whole blood-SoJIA-SoJIA	4447846287_D	whole blood	SoJIA
4447846287_E	SoJIA	GSM2672899	GSE100164	4447846287_E: whole blood-SoJIA-SoJIA	4447846287_E	whole blood	SoJIA
4447846287_F	Control	GSM2672923	GSE100164	4447846287_F: whole blood-SoJIA-Control	4447846287_F	whole blood	SoJIA
4447846337_A	SoJIA	GSM2672890	GSE100164	4447846337_A: whole blood-SoJIA-SoJIA	4447846337_A	whole blood	SoJIA
4447846287_G	SoJIA	GSM2672881	GSE100164	4447846287_G: whole blood-SoJIA-SoJIA	4447846287_G	whole blood	SoJIA
4447846337_B	SoJIA	GSM2672872	GSE100164	4447846337_B: whole blood-SoJIA-SoJIA	4447846337_B	whole blood	SoJIA
4447846287_H	SoJIA	GSM2672863	GSE100164	4447846287_H: whole blood-SoJIA-SoJIA	4447846287_H	whole blood	SoJIA
4447846287_I	SoJIA	GSM2672906	GSE100164	4447846287_I: whole blood-SoJIA-SoJIA	4447846287_I	whole blood	SoJIA
4447846337_D	SoJIA	GSM2672853	GSE100164	4447846337_D: whole blood-SoJIA-SoJIA	4447846337_D	whole blood	SoJIA
4447846287_J	Control	GSM2672916	GSE100164	4447846287_J: whole blood-SoJIA-Control	4447846287_J	whole blood	SoJIA
4447846337_E	SoJIA	GSM2672896	GSE100164	4447846337_E: whole blood-SoJIA-SoJIA	4447846337_E	whole blood	SoJIA
4447846287_K	SoJIA	GSM2672888	GSE100164	4447846287_K: whole blood-SoJIA-SoJIA	4447846287_K	whole blood	SoJIA
4447846337_F	SoJIA	GSM2672878	GSE100164	4447846337_F: whole blood-SoJIA-SoJIA	4447846337_F	whole blood	SoJIA
4447846287_L	SoJIA	GSM2672870	GSE100164	4447846287_L: whole blood-SoJIA-SoJIA	4447846287_L	whole blood	SoJIA
4447846291_A	SoJIA	GSM2672913	GSE100164	4447846291_A: whole blood-SoJIA-SoJIA	4447846291_A	whole blood	SoJIA
4447846337_H	Control	GSM2672924	GSE100164	4447846337_H: whole blood-SoJIA-Control	4447846337_H	whole blood	SoJIA
4447846291_B	Control	GSM2672933	GSE100164	4447846291_B: whole blood-SoJIA-Control	4447846291_B	whole blood	SoJIA
4447846291_C	SoJIA	GSM2672894	GSE100164	4447846291_C: whole blood-SoJIA-SoJIA	4447846291_C	whole blood	SoJIA
4447846291_D	SoJIA	GSM2672876	GSE100164	4447846291_D: whole blood-SoJIA-SoJIA	4447846291_D	whole blood	SoJIA
4447846291_E	SoJIA	GSM2672858	GSE100164	4447846291_E: whole blood-SoJIA-SoJIA	4447846291_E	whole blood	SoJIA
4447846291_F	Control	GSM2672926	GSE100164	4447846291_F: whole blood-SoJIA-Control	4447846291_F	whole blood	SoJIA
4447846291_J	Control	GSM2672919	GSE100164	4447846291_J: whole blood-SoJIA-Control	4447846291_J	whole blood	SoJIA
4447846338_E	SoJIA	GSM2672860	GSE100164	4447846338_E: whole blood-SoJIA-SoJIA	4447846338_E	whole blood	SoJIA
4447846338_F	SoJIA	GSM2672903	GSE100164	4447846338_F: whole blood-SoJIA-SoJIA	4447846338_F	whole blood	SoJIA

Group Sets View in Gene Expression Browser

Name
All Samples		View
Illness	Default	View
In order to make new Group Sets or change settings, please log in.

Module Analysis

Group Set
All Samples
Illness

SIDRA