Sample Set Annotation Tool: A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (Staph Datasets)-GSE100165

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Development of a cost-effective and practical targeted transcriptional fingerprinting assay (TFA) for monitoring a diverse repertoire of immune responses identified in the human blood transcriptome relying on a modular transcriptional repertoire built on the basis of variations in transcript abundance measured on a genome wide scale in the blood of nearly 1000 subjects across 16 immunologic conditions.

Hypothesis

Experimental Design

Experimental Variables

Controls

Methods

RNA was extracted with MagMAX™ RNA Isolation Kit

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE100165

Expected Samples:

143 Samples Loaded: 143

Species

Human (Homo sapiens)

Sample Source

Whole Blood

Disease

Staph

Treatment Protocol

Growth Protocol

Extraction Protocol

RNA was extracted with MagMAX™ RNA Isolation Kit

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	Illness	GEOsampleID	GEOID	originalBRI	BRIsampleID
4676163001_L	Control	GSM2672953	GSE100165	4676163001_L: whole blood-Staph-Control	4676163001_L
4676163033_L	Control	GSM2672944	GSE100165	4676163033_L: whole blood-Staph-Control	4676163033_L
4676163043_L	Control	GSM2672948	GSE100165	4676163043_L: whole blood-Staph-Control	4676163043_L
4676163044_C	Control	GSM2672943	GSE100165	4676163044_C: whole blood-Staph-Control	4676163044_C
4676163045_K	Staph	GSM2672983	GSE100165	4676163045_K: whole blood-Staph-Staph	4676163045_K

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File
GSE100165_Sample_annotaion-whole blood-Staph.csv Sample Set Spreadsheet

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	Illness	GEOsampleID	GEOID	OriginalBRI	BRIsampleID	Source	Dataset
4676163033_L	Control	GSM2672944	GSE100165	4676163033_L: whole blood-Staph-Control	4676163033_L	whole blood	Staph
4676163043_L	Control	GSM2672948	GSE100165	4676163043_L: whole blood-Staph-Control	4676163043_L	whole blood	Staph
4676163044_C	Control	GSM2672943	GSE100165	4676163044_C: whole blood-Staph-Control	4676163044_C	whole blood	Staph
4676163045_K	Staph	GSM2672983	GSE100165	4676163045_K: whole blood-Staph-Staph	4676163045_K	whole blood	Staph
4676163045_L	Control	GSM2672952	GSE100165	4676163045_L: whole blood-Staph-Control	4676163045_L	whole blood	Staph
4676163046_A	Control	GSM2672958	GSE100165	4676163046_A: whole blood-Staph-Control	4676163046_A	whole blood	Staph
4676163046_B	Control	GSM2672939	GSE100165	4676163046_B: whole blood-Staph-Control	4676163046_B	whole blood	Staph
4676163046_C	Control	GSM2672940	GSE100165	4676163046_C: whole blood-Staph-Control	4676163046_C	whole blood	Staph
4676163046_D	Control	GSM2672941	GSE100165	4676163046_D: whole blood-Staph-Control	4676163046_D	whole blood	Staph
4676163046_E	Control	GSM2672937	GSE100165	4676163046_E: whole blood-Staph-Control	4676163046_E	whole blood	Staph
4676163046_F	Control	GSM2672938	GSE100165	4676163046_F: whole blood-Staph-Control	4676163046_F	whole blood	Staph
4676163046_H	Control	GSM2672945	GSE100165	4676163046_H: whole blood-Staph-Control	4676163046_H	whole blood	Staph
4676163046_I	Control	GSM2672951	GSE100165	4676163046_I: whole blood-Staph-Control	4676163046_I	whole blood	Staph
4676163047_A	Staph	GSM2673037	GSE100165	4676163047_A: whole blood-Staph-Staph	4676163047_A	whole blood	Staph
4676163047_B	Staph	GSM2673038	GSE100165	4676163047_B: whole blood-Staph-Staph	4676163047_B	whole blood	Staph
4676163047_C	Staph	GSM2673039	GSE100165	4676163047_C: whole blood-Staph-Staph	4676163047_C	whole blood	Staph
4676163047_D	Staph	GSM2673073	GSE100165	4676163047_D: whole blood-Staph-Staph	4676163047_D	whole blood	Staph
4676163047_E	Staph	GSM2673040	GSE100165	4676163047_E: whole blood-Staph-Staph	4676163047_E	whole blood	Staph
4676163047_F	Staph	GSM2672992	GSE100165	4676163047_F: whole blood-Staph-Staph	4676163047_F	whole blood	Staph
4676163047_G	Staph	GSM2673074	GSE100165	4676163047_G: whole blood-Staph-Staph	4676163047_G	whole blood	Staph
4676163047_H	Staph	GSM2673033	GSE100165	4676163047_H: whole blood-Staph-Staph	4676163047_H	whole blood	Staph
4676163047_I	Staph	GSM2673034	GSE100165	4676163047_I: whole blood-Staph-Staph	4676163047_I	whole blood	Staph
4676163047_J	Staph	GSM2673035	GSE100165	4676163047_J: whole blood-Staph-Staph	4676163047_J	whole blood	Staph
4676163047_K	Staph	GSM2673036	GSE100165	4676163047_K: whole blood-Staph-Staph	4676163047_K	whole blood	Staph
4676163047_L	Control	GSM2672949	GSE100165	4676163047_L: whole blood-Staph-Control	4676163047_L	whole blood	Staph
4676163048_A	Control	GSM2672957	GSE100165	4676163048_A: whole blood-Staph-Control	4676163048_A	whole blood	Staph
4676163048_C	Staph	GSM2672982	GSE100165	4676163048_C: whole blood-Staph-Staph	4676163048_C	whole blood	Staph
4676163048_D	Staph	GSM2672991	GSE100165	4676163048_D: whole blood-Staph-Staph	4676163048_D	whole blood	Staph
4676163048_F	Control	GSM2672942	GSE100165	4676163048_F: whole blood-Staph-Control	4676163048_F	whole blood	Staph
5083722154_A	Staph	GSM2673067	GSE100165	5083722154_A: whole blood-Staph-Staph	5083722154_A	whole blood	Staph
5083722154_B	Staph	GSM2673011	GSE100165	5083722154_B: whole blood-Staph-Staph	5083722154_B	whole blood	Staph
5083722154_C	Staph	GSM2672989	GSE100165	5083722154_C: whole blood-Staph-Staph	5083722154_C	whole blood	Staph
5083722154_D	Control	GSM2672960	GSE100165	5083722154_D: whole blood-Staph-Control	5083722154_D	whole blood	Staph
5083722154_E	Staph	GSM2673012	GSE100165	5083722154_E: whole blood-Staph-Staph	5083722154_E	whole blood	Staph
5083722154_F	Staph	GSM2672997	GSE100165	5083722154_F: whole blood-Staph-Staph	5083722154_F	whole blood	Staph
5083722154_H	Staph	GSM2673007	GSE100165	5083722154_H: whole blood-Staph-Staph	5083722154_H	whole blood	Staph
5083722154_I	Staph	GSM2672984	GSE100165	5083722154_I: whole blood-Staph-Staph	5083722154_I	whole blood	Staph
5083722154_K	Control	GSM2672970	GSE100165	5083722154_K: whole blood-Staph-Control	5083722154_K	whole blood	Staph
4676163060_G	Control	GSM2672946	GSE100165	4676163060_G: whole blood-Staph-Control	4676163060_G	whole blood	Staph
4676163060_H	Staph	GSM2673041	GSE100165	4676163060_H: whole blood-Staph-Staph	4676163060_H	whole blood	Staph
5083722155_A	Staph	GSM2673058	GSE100165	5083722155_A: whole blood-Staph-Staph	5083722155_A	whole blood	Staph
4676163060_I	Staph	GSM2673069	GSE100165	4676163060_I: whole blood-Staph-Staph	4676163060_I	whole blood	Staph
5083722155_B	Staph	GSM2673050	GSE100165	5083722155_B: whole blood-Staph-Staph	5083722155_B	whole blood	Staph
4676163060_J	Staph	GSM2673014	GSE100165	4676163060_J: whole blood-Staph-Staph	4676163060_J	whole blood	Staph
5083722155_C	Staph	GSM2673005	GSE100165	5083722155_C: whole blood-Staph-Staph	5083722155_C	whole blood	Staph
4676163060_K	Staph	GSM2673017	GSE100165	4676163060_K: whole blood-Staph-Staph	4676163060_K	whole blood	Staph
4676163060_L	Control	GSM2672956	GSE100165	4676163060_L: whole blood-Staph-Control	4676163060_L	whole blood	Staph
5083722155_E	Staph	GSM2672998	GSE100165	5083722155_E: whole blood-Staph-Staph	5083722155_E	whole blood	Staph
4676163064_A	Staph	GSM2673019	GSE100165	4676163064_A: whole blood-Staph-Staph	4676163064_A	whole blood	Staph
5083722155_F	Staph	GSM2672995	GSE100165	5083722155_F: whole blood-Staph-Staph	5083722155_F	whole blood	Staph
4676163064_B	Staph	GSM2673020	GSE100165	4676163064_B: whole blood-Staph-Staph	4676163064_B	whole blood	Staph
4676163088_D	Control	GSM2672950	GSE100165	4676163088_D: whole blood-Staph-Control	4676163088_D	whole blood	Staph
5083722155_G	Control	GSM2672975	GSE100165	5083722155_G: whole blood-Staph-Control	5083722155_G	whole blood	Staph
4676163064_C	Staph	GSM2673022	GSE100165	4676163064_C: whole blood-Staph-Staph	4676163064_C	whole blood	Staph
4676163088_E	Control	GSM2672954	GSE100165	4676163088_E: whole blood-Staph-Control	4676163088_E	whole blood	Staph
4676163064_D	Staph	GSM2673024	GSE100165	4676163064_D: whole blood-Staph-Staph	4676163064_D	whole blood	Staph
4676163088_F	Control	GSM2672947	GSE100165	4676163088_F: whole blood-Staph-Control	4676163088_F	whole blood	Staph
5083722155_I	Staph	GSM2672988	GSE100165	5083722155_I: whole blood-Staph-Staph	5083722155_I	whole blood	Staph
4676163064_E	Staph	GSM2673029	GSE100165	4676163064_E: whole blood-Staph-Staph	4676163064_E	whole blood	Staph
5083722155_J	Staph	GSM2673079	GSE100165	5083722155_J: whole blood-Staph-Staph	5083722155_J	whole blood	Staph
4676163064_F	Staph	GSM2673031	GSE100165	4676163064_F: whole blood-Staph-Staph	4676163064_F	whole blood	Staph
5083722155_K	Staph	GSM2673051	GSE100165	5083722155_K: whole blood-Staph-Staph	5083722155_K	whole blood	Staph
4676163064_G	Staph	GSM2673071	GSE100165	4676163064_G: whole blood-Staph-Staph	4676163064_G	whole blood	Staph
5083722155_L	Control	GSM2672972	GSE100165	5083722155_L: whole blood-Staph-Control	5083722155_L	whole blood	Staph
4676163064_H	Staph	GSM2673032	GSE100165	4676163064_H: whole blood-Staph-Staph	4676163064_H	whole blood	Staph
5083722156_A	Staph	GSM2673060	GSE100165	5083722156_A: whole blood-Staph-Staph	5083722156_A	whole blood	Staph
4676163064_I	Staph	GSM2673013	GSE100165	4676163064_I: whole blood-Staph-Staph	4676163064_I	whole blood	Staph
5083722156_B	Control	GSM2672978	GSE100165	5083722156_B: whole blood-Staph-Control	5083722156_B	whole blood	Staph
4676163064_J	Staph	GSM2673018	GSE100165	4676163064_J: whole blood-Staph-Staph	4676163064_J	whole blood	Staph
4676163064_K	Staph	GSM2673021	GSE100165	4676163064_K: whole blood-Staph-Staph	4676163064_K	whole blood	Staph
4676163064_L	Control	GSM2672955	GSE100165	4676163064_L: whole blood-Staph-Control	4676163064_L	whole blood	Staph
4676163067_A	Staph	GSM2673025	GSE100165	4676163067_A: whole blood-Staph-Staph	4676163067_A	whole blood	Staph
4676163067_B	Staph	GSM2673026	GSE100165	4676163067_B: whole blood-Staph-Staph	4676163067_B	whole blood	Staph
5083722156_G	Staph	GSM2673046	GSE100165	5083722156_G: whole blood-Staph-Staph	5083722156_G	whole blood	Staph
4676163067_C	Staph	GSM2673027	GSE100165	4676163067_C: whole blood-Staph-Staph	4676163067_C	whole blood	Staph
4676163067_D	Staph	GSM2673028	GSE100165	4676163067_D: whole blood-Staph-Staph	4676163067_D	whole blood	Staph
5083722156_I	Staph	GSM2673008	GSE100165	5083722156_I: whole blood-Staph-Staph	5083722156_I	whole blood	Staph
4676163067_E	Staph	GSM2672981	GSE100165	4676163067_E: whole blood-Staph-Staph	4676163067_E	whole blood	Staph
4676163067_F	Staph	GSM2673023	GSE100165	4676163067_F: whole blood-Staph-Staph	4676163067_F	whole blood	Staph
5083722156_K	Control	GSM2672959	GSE100165	5083722156_K: whole blood-Staph-Control	5083722156_K	whole blood	Staph
4676163067_G	Staph	GSM2673072	GSE100165	4676163067_G: whole blood-Staph-Staph	4676163067_G	whole blood	Staph
4676163067_H	Staph	GSM2673015	GSE100165	4676163067_H: whole blood-Staph-Staph	4676163067_H	whole blood	Staph
5083722157_A	Staph	GSM2672999	GSE100165	5083722157_A: whole blood-Staph-Staph	5083722157_A	whole blood	Staph
4676163067_I	Staph	GSM2673070	GSE100165	4676163067_I: whole blood-Staph-Staph	4676163067_I	whole blood	Staph
4676163067_J	Staph	GSM2673016	GSE100165	4676163067_J: whole blood-Staph-Staph	4676163067_J	whole blood	Staph
4676163067_K	Staph	GSM2673030	GSE100165	4676163067_K: whole blood-Staph-Staph	4676163067_K	whole blood	Staph
5083722157_E	Staph	GSM2672996	GSE100165	5083722157_E: whole blood-Staph-Staph	5083722157_E	whole blood	Staph
5083722157_F	Staph	GSM2673042	GSE100165	5083722157_F: whole blood-Staph-Staph	5083722157_F	whole blood	Staph
5083722157_G	Staph	GSM2673052	GSE100165	5083722157_G: whole blood-Staph-Staph	5083722157_G	whole blood	Staph
5083722157_H	Staph	GSM2673043	GSE100165	5083722157_H: whole blood-Staph-Staph	5083722157_H	whole blood	Staph
5083722157_K	Control	GSM2672966	GSE100165	5083722157_K: whole blood-Staph-Control	5083722157_K	whole blood	Staph
5083722157_L	Staph	GSM2673056	GSE100165	5083722157_L: whole blood-Staph-Staph	5083722157_L	whole blood	Staph
5083722158_A	Staph	GSM2673077	GSE100165	5083722158_A: whole blood-Staph-Staph	5083722158_A	whole blood	Staph
5083722158_B	Staph	GSM2673010	GSE100165	5083722158_B: whole blood-Staph-Staph	5083722158_B	whole blood	Staph
5083722158_D	Staph	GSM2673049	GSE100165	5083722158_D: whole blood-Staph-Staph	5083722158_D	whole blood	Staph
5083722158_F	Staph	GSM2672986	GSE100165	5083722158_F: whole blood-Staph-Staph	5083722158_F	whole blood	Staph
5083722158_J	Staph	GSM2673004	GSE100165	5083722158_J: whole blood-Staph-Staph	5083722158_J	whole blood	Staph
5083722158_L	Control	GSM2672973	GSE100165	5083722158_L: whole blood-Staph-Control	5083722158_L	whole blood	Staph
5083722159_B	Staph	GSM2673044	GSE100165	5083722159_B: whole blood-Staph-Staph	5083722159_B	whole blood	Staph
5083722159_C	Control	GSM2672963	GSE100165	5083722159_C: whole blood-Staph-Control	5083722159_C	whole blood	Staph
5083722159_F	Staph	GSM2673055	GSE100165	5083722159_F: whole blood-Staph-Staph	5083722159_F	whole blood	Staph
5083722159_G	Control	GSM2672974	GSE100165	5083722159_G: whole blood-Staph-Control	5083722159_G	whole blood	Staph
5083722159_H	Staph	GSM2673059	GSE100165	5083722159_H: whole blood-Staph-Staph	5083722159_H	whole blood	Staph
5083722163_A	Staph	GSM2673068	GSE100165	5083722163_A: whole blood-Staph-Staph	5083722163_A	whole blood	Staph
5083722163_B	Staph	GSM2673076	GSE100165	5083722163_B: whole blood-Staph-Staph	5083722163_B	whole blood	Staph
5083722163_D	Staph	GSM2673047	GSE100165	5083722163_D: whole blood-Staph-Staph	5083722163_D	whole blood	Staph
5083722163_E	Staph	GSM2672993	GSE100165	5083722163_E: whole blood-Staph-Staph	5083722163_E	whole blood	Staph
5083722163_F	Staph	GSM2673002	GSE100165	5083722163_F: whole blood-Staph-Staph	5083722163_F	whole blood	Staph
5083722163_G	Staph	GSM2673009	GSE100165	5083722163_G: whole blood-Staph-Staph	5083722163_G	whole blood	Staph
5083722163_H	Staph	GSM2673048	GSE100165	5083722163_H: whole blood-Staph-Staph	5083722163_H	whole blood	Staph
5083722163_I	Staph	GSM2672990	GSE100165	5083722163_I: whole blood-Staph-Staph	5083722163_I	whole blood	Staph
5083722165_A	Staph	GSM2673003	GSE100165	5083722165_A: whole blood-Staph-Staph	5083722165_A	whole blood	Staph
5083722165_E	Control	GSM2672965	GSE100165	5083722165_E: whole blood-Staph-Control	5083722165_E	whole blood	Staph
5083722165_F	Control	GSM2672968	GSE100165	5083722165_F: whole blood-Staph-Control	5083722165_F	whole blood	Staph
5083722165_G	Staph	GSM2673045	GSE100165	5083722165_G: whole blood-Staph-Staph	5083722165_G	whole blood	Staph
5083722165_I	Control	GSM2672977	GSE100165	5083722165_I: whole blood-Staph-Control	5083722165_I	whole blood	Staph
5083722165_L	Staph	GSM2673064	GSE100165	5083722165_L: whole blood-Staph-Staph	5083722165_L	whole blood	Staph
5083722169_A	Staph	GSM2673000	GSE100165	5083722169_A: whole blood-Staph-Staph	5083722169_A	whole blood	Staph
5083722169_B	Staph	GSM2673065	GSE100165	5083722169_B: whole blood-Staph-Staph	5083722169_B	whole blood	Staph
5083722169_D	Staph	GSM2673053	GSE100165	5083722169_D: whole blood-Staph-Staph	5083722169_D	whole blood	Staph
5083722169_E	Staph	GSM2673062	GSE100165	5083722169_E: whole blood-Staph-Staph	5083722169_E	whole blood	Staph
5083722169_H	Staph	GSM2673054	GSE100165	5083722169_H: whole blood-Staph-Staph	5083722169_H	whole blood	Staph
5083722169_J	Control	GSM2672969	GSE100165	5083722169_J: whole blood-Staph-Control	5083722169_J	whole blood	Staph
5083722169_K	Staph	GSM2673078	GSE100165	5083722169_K: whole blood-Staph-Staph	5083722169_K	whole blood	Staph
5083722170_B	Control	GSM2672961	GSE100165	5083722170_B: whole blood-Staph-Control	5083722170_B	whole blood	Staph
5083722170_D	Staph	GSM2672994	GSE100165	5083722170_D: whole blood-Staph-Staph	5083722170_D	whole blood	Staph
5083722170_E	Staph	GSM2673066	GSE100165	5083722170_E: whole blood-Staph-Staph	5083722170_E	whole blood	Staph
5083722170_F	Staph	GSM2673061	GSE100165	5083722170_F: whole blood-Staph-Staph	5083722170_F	whole blood	Staph
5083722170_G	Control	GSM2672964	GSE100165	5083722170_G: whole blood-Staph-Control	5083722170_G	whole blood	Staph
5083722170_H	Staph	GSM2673006	GSE100165	5083722170_H: whole blood-Staph-Staph	5083722170_H	whole blood	Staph
5083722170_J	Staph	GSM2673001	GSE100165	5083722170_J: whole blood-Staph-Staph	5083722170_J	whole blood	Staph
5083722170_L	Staph	GSM2673063	GSE100165	5083722170_L: whole blood-Staph-Staph	5083722170_L	whole blood	Staph
5083722171_A	Control	GSM2672962	GSE100165	5083722171_A: whole blood-Staph-Control	5083722171_A	whole blood	Staph
5083722171_D	Staph	GSM2672985	GSE100165	5083722171_D: whole blood-Staph-Staph	5083722171_D	whole blood	Staph
5083722171_F	Staph	GSM2672987	GSE100165	5083722171_F: whole blood-Staph-Staph	5083722171_F	whole blood	Staph
5083722171_G	Control	GSM2672976	GSE100165	5083722171_G: whole blood-Staph-Control	5083722171_G	whole blood	Staph
5083722171_K	Control	GSM2672979	GSE100165	5083722171_K: whole blood-Staph-Control	5083722171_K	whole blood	Staph
5083722172_H	Control	GSM2672967	GSE100165	5083722172_H: whole blood-Staph-Control	5083722172_H	whole blood	Staph
5083722172_I	Control	GSM2672971	GSE100165	5083722172_I: whole blood-Staph-Control	5083722172_I	whole blood	Staph
5083722172_J	Staph	GSM2673075	GSE100165	5083722172_J: whole blood-Staph-Staph	5083722172_J	whole blood	Staph
5083722172_K	Staph	GSM2673057	GSE100165	5083722172_K: whole blood-Staph-Staph	5083722172_K	whole blood	Staph
5083722172_L	Control	GSM2672980	GSE100165	5083722172_L: whole blood-Staph-Control	5083722172_L	whole blood	Staph
4676163001_L	Control	GSM2672953	GSE100165	4676163001_L: whole blood-Staph-Control	4676163001_L	whole blood	Staph

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