Sample Set Annotation Tool: A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (TB Datasets)-GSE100166

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Development of a cost-effective and practical targeted transcriptional fingerprinting assay (TFA) for monitoring a diverse repertoire of immune responses identified in the human blood transcriptome relying on a modular transcriptional repertoire built on the basis of variations in transcript abundance measured on a genome wide scale in the blood of nearly 1000 subjects across 16 immunologic conditions.

Hypothesis

Experimental Design

Experimental Variables

Controls

Methods

RNA was extracted with MagMAX™ RNA Isolation Kit

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE100166

Expected Samples:

34 Samples Loaded: 34

Species

Human (Homo sapiens)

Sample Source

Whole Blood

Disease

Tuberculosis

Treatment Protocol

Growth Protocol

Extraction Protocol

RNA was extracted with MagMAX™ RNA Isolation Kit

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	Illness	GEOsampleID	GEOID	originalBRI	BRIsampleID
4487653361_A	Control	GSM2673080	GSE100166	4487653361_A: whole blood-TB-Control	4487653361_A
4487653361_B	Control	GSM2673081	GSE100166	4487653361_B: whole blood-TB-Control	4487653361_B
4487653361_C	PTB	GSM2673091	GSE100166	4487653361_C: whole blood-TB-PTB	4487653361_C
4487653361_D	PTB	GSM2673092	GSE100166	4487653361_D: whole blood-TB-PTB	4487653361_D
4487653361_E	PTB	GSM2673093	GSE100166	4487653361_E: whole blood-TB-PTB	4487653361_E

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File
GSE100166_Sample_annotaion-whole blood-TB.csv Sample Set Spreadsheet

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	Illness	GEOsampleID	GEOID	OriginalBRI	BRIsampleID	Source	Dataset
4487653374_H	Control	GSM2673083	GSE100166	4487653374_H: whole blood-TB-Control	4487653374_H	whole blood	TB
4487653374_I	PTB	GSM2673096	GSE100166	4487653374_I: whole blood-TB-PTB	4487653374_I	whole blood	TB
4487653374_J	PTB	GSM2673097	GSE100166	4487653374_J: whole blood-TB-PTB	4487653374_J	whole blood	TB
4487653374_K	PTB	GSM2673098	GSE100166	4487653374_K: whole blood-TB-PTB	4487653374_K	whole blood	TB
4487653374_L	PTB	GSM2673099	GSE100166	4487653374_L: whole blood-TB-PTB	4487653374_L	whole blood	TB
4487653375_B	PTB	GSM2673100	GSE100166	4487653375_B: whole blood-TB-PTB	4487653375_B	whole blood	TB
4487653375_C	PTB	GSM2673101	GSE100166	4487653375_C: whole blood-TB-PTB	4487653375_C	whole blood	TB
4487653375_D	PTB	GSM2673102	GSE100166	4487653375_D: whole blood-TB-PTB	4487653375_D	whole blood	TB
4487653375_J	Control	GSM2673084	GSE100166	4487653375_J: whole blood-TB-Control	4487653375_J	whole blood	TB
4487653375_K	Control	GSM2673085	GSE100166	4487653375_K: whole blood-TB-Control	4487653375_K	whole blood	TB
4487653397_A	Control	GSM2673086	GSE100166	4487653397_A: whole blood-TB-Control	4487653397_A	whole blood	TB
4487653397_B	Control	GSM2673087	GSE100166	4487653397_B: whole blood-TB-Control	4487653397_B	whole blood	TB
4487653397_C	PTB	GSM2673103	GSE100166	4487653397_C: whole blood-TB-PTB	4487653397_C	whole blood	TB
4487653397_D	PTB	GSM2673104	GSE100166	4487653397_D: whole blood-TB-PTB	4487653397_D	whole blood	TB
4487653397_E	PTB	GSM2673105	GSE100166	4487653397_E: whole blood-TB-PTB	4487653397_E	whole blood	TB
4487653397_G	PTB	GSM2673106	GSE100166	4487653397_G: whole blood-TB-PTB	4487653397_G	whole blood	TB
4487653398_A	PTB	GSM2673107	GSE100166	4487653398_A: whole blood-TB-PTB	4487653398_A	whole blood	TB
4487653398_B	PTB	GSM2673108	GSE100166	4487653398_B: whole blood-TB-PTB	4487653398_B	whole blood	TB
4487653398_C	PTB	GSM2673109	GSE100166	4487653398_C: whole blood-TB-PTB	4487653398_C	whole blood	TB
4487653398_D	PTB	GSM2673110	GSE100166	4487653398_D: whole blood-TB-PTB	4487653398_D	whole blood	TB
4487653398_K	Control	GSM2673088	GSE100166	4487653398_K: whole blood-TB-Control	4487653398_K	whole blood	TB
4487653398_L	Control	GSM2673089	GSE100166	4487653398_L: whole blood-TB-Control	4487653398_L	whole blood	TB
4487653399_C	Control	GSM2673090	GSE100166	4487653399_C: whole blood-TB-Control	4487653399_C	whole blood	TB
4487653399_D	PTB	GSM2673111	GSE100166	4487653399_D: whole blood-TB-PTB	4487653399_D	whole blood	TB
4487653361_A	Control	GSM2673080	GSE100166	4487653361_A: whole blood-TB-Control	4487653361_A	whole blood	TB
4487653399_E	PTB	GSM2673112	GSE100166	4487653399_E: whole blood-TB-PTB	4487653399_E	whole blood	TB
4487653361_B	Control	GSM2673081	GSE100166	4487653361_B: whole blood-TB-Control	4487653361_B	whole blood	TB
4487653399_F	PTB	GSM2673113	GSE100166	4487653399_F: whole blood-TB-PTB	4487653399_F	whole blood	TB
4487653361_C	PTB	GSM2673091	GSE100166	4487653361_C: whole blood-TB-PTB	4487653361_C	whole blood	TB
4487653361_D	PTB	GSM2673092	GSE100166	4487653361_D: whole blood-TB-PTB	4487653361_D	whole blood	TB
4487653361_E	PTB	GSM2673093	GSE100166	4487653361_E: whole blood-TB-PTB	4487653361_E	whole blood	TB
4487653361_F	PTB	GSM2673094	GSE100166	4487653361_F: whole blood-TB-PTB	4487653361_F	whole blood	TB
4487653361_J	PTB	GSM2673095	GSE100166	4487653361_J: whole blood-TB-PTB	4487653361_J	whole blood	TB
4487653374_G	Control	GSM2673082	GSE100166	4487653374_G: whole blood-TB-Control	4487653374_G	whole blood	TB

Group Sets View in Gene Expression Browser

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Module Analysis

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SIDRA