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SIDRA

GXB

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Description

Maternal Whole Blood Gene Expression at 18 and 28 weeks of Gestation Associated with Spontaneous Preterm Birth in Asymptomatic Women-GSE59491

Purpose

To investigate maternal whole blood gene expression profiles associated with spontaneous preterm birth (SPTB, <37 weeks) in asymptomatic pregnant women.The ‘All Our Babies’ (AOB) community based cohort in Calgary recruited pregnant women between May 2008 and December 2010.

Experimental Design

Maternal blood at 17-23 (time point 1, T1) and 27-33 weeks of gestation (T2) were collected. Fifty-one SPTBs were matched to 114 term delivery controls.Microarray was performed on 326 samples from 165 women. Univariate analyses determined significant clinical factors and differential gene expression associated with SPTB. Thirteen genes were validated using qRT-PCR.Three multivariate models were constructed to identify gene expressions associated with SPTB at T1 (Model A) and T2 (Model B), and temporal gene expressions (T2-T1) associated with SPTB at T2 (Model C).

Methods
Data were normalized using RMA and differential expression was determined using Limma with multiple hypothesis testing (Benjamini and Hochberg); Bioconductor, R
Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE59491

Platform Affymetrix HuGene_2_1_st v1
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