Sample Set Annotation Tool: A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (COPD Datasets)

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Development of a cost-effective and practical targeted transcriptional fingerprinting assay (TFA) for monitoring a diverse repertoire of immune responses identified in the human blood transcriptome relying on a modular transcriptional repertoire built on the basis of variations in transcript abundance measured on a genome wide scale in the blood of nearly 1000 subjects across 16 immunologic conditions.

Hypothesis

Experimental Design

Experimental Variables

Controls

Methods

The data were normalised using average normalization with Genome Studio

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE100153

Expected Samples:

43 Samples Loaded: 43

Species

Human (Homo sapiens)

Sample Source

Whole Blood

Disease

COPD

Treatment Protocol

Growth Protocol

Extraction Protocol

RNA was extracted with MagMAX™ RNA Isolation Kit

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	Illness	GEOsampleID	GEOID	originalBRI	BRIsampleID
4487653326_A	COPD	GSM2672277	GSE100153	4487653326_A: whole blood-COPD-COPD	4487653326_A
4487653326_C	Control	GSM2672247	GSE100153	4487653326_C: whole blood-COPD-Control	4487653326_C
4487653326_D	COPD	GSM2672271	GSE100153	4487653326_D: whole blood-COPD-COPD	4487653326_D
4487653326_E	Control	GSM2672250	GSE100153	4487653326_E: whole blood-COPD-Control	4487653326_E
4487653326_F	COPD	GSM2672265	GSE100153	4487653326_F: whole blood-COPD-COPD	4487653326_F

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File
GSE100153_Sample_annotaion-whole blood-COPD.csv Sample Set Spreadsheet

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	Illness	GEOsampleID	GEOID	OriginalBRI	BRIsampleID	Source	Dataset
4487653342_D	Control	GSM2672246	GSE100153	4487653342_D: whole blood-COPD-Control	4487653342_D	whole blood	COPD
4487653342_E	Control	GSM2672243	GSE100153	4487653342_E: whole blood-COPD-Control	4487653342_E	whole blood	COPD
4487653326_A	COPD	GSM2672277	GSE100153	4487653326_A: whole blood-COPD-COPD	4487653326_A	whole blood	COPD
4487653326_C	Control	GSM2672247	GSE100153	4487653326_C: whole blood-COPD-Control	4487653326_C	whole blood	COPD
4487653326_D	COPD	GSM2672271	GSE100153	4487653326_D: whole blood-COPD-COPD	4487653326_D	whole blood	COPD
4487653326_E	Control	GSM2672250	GSE100153	4487653326_E: whole blood-COPD-Control	4487653326_E	whole blood	COPD
4487653326_F	COPD	GSM2672265	GSE100153	4487653326_F: whole blood-COPD-COPD	4487653326_F	whole blood	COPD
4487653326_I	COPD	GSM2672279	GSE100153	4487653326_I: whole blood-COPD-COPD	4487653326_I	whole blood	COPD
4487653326_J	Control	GSM2672260	GSE100153	4487653326_J: whole blood-COPD-Control	4487653326_J	whole blood	COPD
4487653326_K	COPD	GSM2672273	GSE100153	4487653326_K: whole blood-COPD-COPD	4487653326_K	whole blood	COPD
4487653326_L	Control	GSM2672256	GSE100153	4487653326_L: whole blood-COPD-Control	4487653326_L	whole blood	COPD
4487653327_A	COPD	GSM2672267	GSE100153	4487653327_A: whole blood-COPD-COPD	4487653327_A	whole blood	COPD
4487653327_B	Control	GSM2672252	GSE100153	4487653327_B: whole blood-COPD-Control	4487653327_B	whole blood	COPD
4487653327_C	COPD	GSM2672281	GSE100153	4487653327_C: whole blood-COPD-COPD	4487653327_C	whole blood	COPD
4487653327_D	COPD	GSM2672275	GSE100153	4487653327_D: whole blood-COPD-COPD	4487653327_D	whole blood	COPD
4487653327_E	COPD	GSM2672269	GSE100153	4487653327_E: whole blood-COPD-COPD	4487653327_E	whole blood	COPD
4487653327_F	Control	GSM2672244	GSE100153	4487653327_F: whole blood-COPD-Control	4487653327_F	whole blood	COPD
4487653327_G	Control	GSM2672241	GSE100153	4487653327_G: whole blood-COPD-Control	4487653327_G	whole blood	COPD
4487653327_H	COPD	GSM2672283	GSE100153	4487653327_H: whole blood-COPD-COPD	4487653327_H	whole blood	COPD
4487653327_I	COPD	GSM2672278	GSE100153	4487653327_I: whole blood-COPD-COPD	4487653327_I	whole blood	COPD
4487653327_J	Control	GSM2672262	GSE100153	4487653327_J: whole blood-COPD-Control	4487653327_J	whole blood	COPD
4487653327_K	COPD	GSM2672272	GSE100153	4487653327_K: whole blood-COPD-COPD	4487653327_K	whole blood	COPD
4487653327_L	Control	GSM2672248	GSE100153	4487653327_L: whole blood-COPD-Control	4487653327_L	whole blood	COPD
4487653341_A	COPD	GSM2672266	GSE100153	4487653341_A: whole blood-COPD-COPD	4487653341_A	whole blood	COPD
4487653341_C	COPD	GSM2672280	GSE100153	4487653341_C: whole blood-COPD-COPD	4487653341_C	whole blood	COPD
4487653341_D	Control	GSM2672245	GSE100153	4487653341_D: whole blood-COPD-Control	4487653341_D	whole blood	COPD
4487653341_E	COPD	GSM2672274	GSE100153	4487653341_E: whole blood-COPD-COPD	4487653341_E	whole blood	COPD
4487653341_F	COPD	GSM2672268	GSE100153	4487653341_F: whole blood-COPD-COPD	4487653341_F	whole blood	COPD
4487653341_H	Control	GSM2672242	GSE100153	4487653341_H: whole blood-COPD-Control	4487653341_H	whole blood	COPD
4487653341_I	Control	GSM2672258	GSE100153	4487653341_I: whole blood-COPD-Control	4487653341_I	whole blood	COPD
4487653341_J	Control	GSM2672254	GSE100153	4487653341_J: whole blood-COPD-Control	4487653341_J	whole blood	COPD
4487653349_A	Control	GSM2672249	GSE100153	4487653349_A: whole blood-COPD-Control	4487653349_A	whole blood	COPD
4487653349_B	Control	GSM2672264	GSE100153	4487653349_B: whole blood-COPD-Control	4487653349_B	whole blood	COPD
4487653349_C	COPD	GSM2672282	GSE100153	4487653349_C: whole blood-COPD-COPD	4487653349_C	whole blood	COPD
4487653349_D	COPD	GSM2672276	GSE100153	4487653349_D: whole blood-COPD-COPD	4487653349_D	whole blood	COPD
4487653349_E	Control	GSM2672259	GSE100153	4487653349_E: whole blood-COPD-Control	4487653349_E	whole blood	COPD
4487653349_F	Control	GSM2672255	GSE100153	4487653349_F: whole blood-COPD-Control	4487653349_F	whole blood	COPD
4487653349_G	Control	GSM2672251	GSE100153	4487653349_G: whole blood-COPD-Control	4487653349_G	whole blood	COPD
4487653349_H	Control	GSM2672261	GSE100153	4487653349_H: whole blood-COPD-Control	4487653349_H	whole blood	COPD
4487653349_J	COPD	GSM2672270	GSE100153	4487653349_J: whole blood-COPD-COPD	4487653349_J	whole blood	COPD
4487653342_A	Control	GSM2672257	GSE100153	4487653342_A: whole blood-COPD-Control	4487653342_A	whole blood	COPD
4487653342_B	Control	GSM2672253	GSE100153	4487653342_B: whole blood-COPD-Control	4487653342_B	whole blood	COPD
4487653342_C	Control	GSM2672263	GSE100153	4487653342_C: whole blood-COPD-Control	4487653342_C	whole blood	COPD

Group Sets View in Gene Expression Browser

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Module Analysis

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Illness

SIDRA