Sample Set Annotation Tool: A Transcriptome Fingerprinting Assay for Clinical Immune Monitoring (Sepsis Datasets)-GSE100159

Study Design
Assay
Sample Info
Files
Info
Samples
Group Sets
Analysis

Purpose

Development of a cost-effective and practical targeted transcriptional fingerprinting assay (TFA) for monitoring a diverse repertoire of immune responses identified in the human blood transcriptome relying on a modular transcriptional repertoire built on the basis of variations in transcript abundance measured on a genome wide scale in the blood of nearly 1000 subjects across 16 immunologic conditions.

Hypothesis

Experimental Design

Experimental Variables

Controls

Methods

RNA was extracted with MagMAX™ RNA Isolation Kit

Additional Information

https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE100159

Expected Samples:

47 Samples Loaded: 47

Species

Human (Homo sapiens)

Sample Source

Whole Blood

Disease

Sepsis

Treatment Protocol

Growth Protocol

Extraction Protocol

RNA was extracted with MagMAX™ RNA Isolation Kit

Storage Conditions

Sample Set Spreadsheet

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Samples Preview

Sample ID	Illness	GEOsampleID	GEOID	originalBRI	BRIsampleID
4444581080_A	other infection	GSM2672587	GSE100159	4444581080_A: whole blood-Sepsis-other infection	4444581080_A
4444581080_B	other infection	GSM2672588	GSE100159	4444581080_B: whole blood-Sepsis-other infection	4444581080_B
4444581080_C	other infection	GSM2672589	GSE100159	4444581080_C: whole blood-Sepsis-other infection	4444581080_C
4444581080_D	melioidosis	GSM2672569	GSE100159	4444581080_D: whole blood-Sepsis-melioidosis	4444581080_D
4444581080_E	melioidosis	GSM2672570	GSE100159	4444581080_E: whole blood-Sepsis-melioidosis	4444581080_E

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File
GSE100159_Sample_annotaion-whole blood-Sepsis.csv Sample Set Spreadsheet

Samples Viewer / Editor

All fields are editable except the "Sample ID" column. To edit a cell, click within the cell. To edit a "date" cell, click on the calendar icon. To cancel an edit, press the ESC key.

Sample ID	Illness	GEOsampleID	GEOID	OriginalBRI	BRIsampleID	Source	Dataset
4444581080_I	Control	GSM2672558	GSE100159	4444581080_I: whole blood-Sepsis-Control	4444581080_I	whole blood	Sepsis
4444581080_J	Control	GSM2672559	GSE100159	4444581080_J: whole blood-Sepsis-Control	4444581080_J	whole blood	Sepsis
4444581080_K	Control	GSM2672560	GSE100159	4444581080_K: whole blood-Sepsis-Control	4444581080_K	whole blood	Sepsis
4444581080_L	Control	GSM2672561	GSE100159	4444581080_L: whole blood-Sepsis-Control	4444581080_L	whole blood	Sepsis
4444581081_A	Control	GSM2672562	GSE100159	4444581081_A: whole blood-Sepsis-Control	4444581081_A	whole blood	Sepsis
4444581081_B	Control	GSM2672563	GSE100159	4444581081_B: whole blood-Sepsis-Control	4444581081_B	whole blood	Sepsis
4444581081_C	Control	GSM2672564	GSE100159	4444581081_C: whole blood-Sepsis-Control	4444581081_C	whole blood	Sepsis
4444581081_D	other infection	GSM2672590	GSE100159	4444581081_D: whole blood-Sepsis-other infection	4444581081_D	whole blood	Sepsis
4444581081_E	other infection	GSM2672591	GSE100159	4444581081_E: whole blood-Sepsis-other infection	4444581081_E	whole blood	Sepsis
4444581081_F	other infection	GSM2672592	GSE100159	4444581081_F: whole blood-Sepsis-other infection	4444581081_F	whole blood	Sepsis
4444581081_G	other infection	GSM2672593	GSE100159	4444581081_G: whole blood-Sepsis-other infection	4444581081_G	whole blood	Sepsis
4444581081_H	melioidosis	GSM2672573	GSE100159	4444581081_H: whole blood-Sepsis-melioidosis	4444581081_H	whole blood	Sepsis
4444581081_I	melioidosis	GSM2672574	GSE100159	4444581081_I: whole blood-Sepsis-melioidosis	4444581081_I	whole blood	Sepsis
4444581081_J	melioidosis	GSM2672575	GSE100159	4444581081_J: whole blood-Sepsis-melioidosis	4444581081_J	whole blood	Sepsis
4444581081_K	melioidosis	GSM2672576	GSE100159	4444581081_K: whole blood-Sepsis-melioidosis	4444581081_K	whole blood	Sepsis
4444581081_L	Control	GSM2672565	GSE100159	4444581081_L: whole blood-Sepsis-Control	4444581081_L	whole blood	Sepsis
4444581086_A	Recovery	GSM2672602	GSE100159	4444581086_A: whole blood-Sepsis-Recovery	4444581086_A	whole blood	Sepsis
4444581086_B	Recovery	GSM2672603	GSE100159	4444581086_B: whole blood-Sepsis-Recovery	4444581086_B	whole blood	Sepsis
4444581086_C	melioidosis	GSM2672577	GSE100159	4444581086_C: whole blood-Sepsis-melioidosis	4444581086_C	whole blood	Sepsis
4444581086_D	melioidosis	GSM2672578	GSE100159	4444581086_D: whole blood-Sepsis-melioidosis	4444581086_D	whole blood	Sepsis
4444581086_E	melioidosis	GSM2672579	GSE100159	4444581086_E: whole blood-Sepsis-melioidosis	4444581086_E	whole blood	Sepsis
4444581086_F	melioidosis	GSM2672580	GSE100159	4444581086_F: whole blood-Sepsis-melioidosis	4444581086_F	whole blood	Sepsis
4444581086_G	melioidosis	GSM2672581	GSE100159	4444581086_G: whole blood-Sepsis-melioidosis	4444581086_G	whole blood	Sepsis
4444581086_H	other infection	GSM2672594	GSE100159	4444581086_H: whole blood-Sepsis-other infection	4444581086_H	whole blood	Sepsis
4444581086_I	other infection	GSM2672595	GSE100159	4444581086_I: whole blood-Sepsis-other infection	4444581086_I	whole blood	Sepsis
4444581086_J	other infection	GSM2672596	GSE100159	4444581086_J: whole blood-Sepsis-other infection	4444581086_J	whole blood	Sepsis
4444581086_K	other infection	GSM2672597	GSE100159	4444581086_K: whole blood-Sepsis-other infection	4444581086_K	whole blood	Sepsis
4444581089_A	other infection	GSM2672598	GSE100159	4444581089_A: whole blood-Sepsis-other infection	4444581089_A	whole blood	Sepsis
4444581089_B	Control	GSM2672566	GSE100159	4444581089_B: whole blood-Sepsis-Control	4444581089_B	whole blood	Sepsis
4444581089_C	Control	GSM2672567	GSE100159	4444581089_C: whole blood-Sepsis-Control	4444581089_C	whole blood	Sepsis
4444581089_D	Control	GSM2672568	GSE100159	4444581089_D: whole blood-Sepsis-Control	4444581089_D	whole blood	Sepsis
4444581089_E	melioidosis	GSM2672582	GSE100159	4444581089_E: whole blood-Sepsis-melioidosis	4444581089_E	whole blood	Sepsis
4444581089_F	melioidosis	GSM2672583	GSE100159	4444581089_F: whole blood-Sepsis-melioidosis	4444581089_F	whole blood	Sepsis
4444581089_G	melioidosis	GSM2672584	GSE100159	4444581089_G: whole blood-Sepsis-melioidosis	4444581089_G	whole blood	Sepsis
4444581089_H	melioidosis	GSM2672585	GSE100159	4444581089_H: whole blood-Sepsis-melioidosis	4444581089_H	whole blood	Sepsis
4444581089_I	melioidosis	GSM2672586	GSE100159	4444581089_I: whole blood-Sepsis-melioidosis	4444581089_I	whole blood	Sepsis
4444581089_J	other infection	GSM2672599	GSE100159	4444581089_J: whole blood-Sepsis-other infection	4444581089_J	whole blood	Sepsis
4444581089_K	other infection	GSM2672600	GSE100159	4444581089_K: whole blood-Sepsis-other infection	4444581089_K	whole blood	Sepsis
4444581089_L	other infection	GSM2672601	GSE100159	4444581089_L: whole blood-Sepsis-other infection	4444581089_L	whole blood	Sepsis
4444581080_A	other infection	GSM2672587	GSE100159	4444581080_A: whole blood-Sepsis-other infection	4444581080_A	whole blood	Sepsis
4444581080_B	other infection	GSM2672588	GSE100159	4444581080_B: whole blood-Sepsis-other infection	4444581080_B	whole blood	Sepsis
4444581080_C	other infection	GSM2672589	GSE100159	4444581080_C: whole blood-Sepsis-other infection	4444581080_C	whole blood	Sepsis
4444581080_D	melioidosis	GSM2672569	GSE100159	4444581080_D: whole blood-Sepsis-melioidosis	4444581080_D	whole blood	Sepsis
4444581080_E	melioidosis	GSM2672570	GSE100159	4444581080_E: whole blood-Sepsis-melioidosis	4444581080_E	whole blood	Sepsis
4444581080_F	melioidosis	GSM2672571	GSE100159	4444581080_F: whole blood-Sepsis-melioidosis	4444581080_F	whole blood	Sepsis
4444581080_G	melioidosis	GSM2672572	GSE100159	4444581080_G: whole blood-Sepsis-melioidosis	4444581080_G	whole blood	Sepsis
4444581080_H	Control	GSM2672557	GSE100159	4444581080_H: whole blood-Sepsis-Control	4444581080_H	whole blood	Sepsis

Group Sets View in Gene Expression Browser

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SIDRA